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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: RABGAP1L (ImmuneEditome ID:9910)

1. Gene summary of enriched editing regions for RABGAP1L

check button Gene summary
Gene informationGene symbol

RABGAP1L

Gene ID

9910

GeneSynonymsHHL|TBC1D18
GeneCytomap

1q25.1

GeneTypeprotein-coding
GeneDescriptionrab GTPase-activating protein 1-like|TBC1 domain family, member 18|expressed in hematopoietic cells, heart, liver (HLL)
GeneModificationdate20230517
UniprotIDB7ZAP0;Q5R372;A0A0U1RRM5;F5H8L0;A0A804HKD7;A0A0U1RQX4;E9PNV2;A0A0C4DG54;A0A0U1RQV7;A0A0U1RQT5;A0A0U1RQY6;E9PS63
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr1:174492581-174493798:+ENST00000367690.4ENSG00000152061.20RABGAP1LncRNA_intronicL2c,AluSx,AluJo,AluJbchr1:174492581-174493798:+.alignment
chr1:174492581-174493798:+ENST00000526253.1ENSG00000152061.20RABGAP1LncRNA_intronicL2c,AluSx,AluJo,AluJbchr1:174492581-174493798:+.alignment
chr1:174503429-174504072:+ENST00000367690.4ENSG00000152061.20RABGAP1LncRNA_intronicL1MC5a,AluJb,AluYchr1:174503429-174504072:+.alignment
chr1:174503429-174504072:+ENST00000526253.1ENSG00000152061.20RABGAP1LncRNA_intronicL1MC5a,AluJb,AluYchr1:174503429-174504072:+.alignment
chr1:174818598-174819141:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluJr,AluJbchr1:174818598-174819141:+.alignment
chr1:174831966-174834331:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicMIR,L2c,AluSx1,AluSp,(TG)n,A-rich,AluJbchr1:174831966-174834331:+.alignment
chr1:174838721-174838912:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluYc3chr1:174838721-174838912:+.alignment
chr1:174856145-174856891:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluSx,AluSg7,MER5Bchr1:174856145-174856891:+.alignment
chr1:174864550-174865270:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluJb,THE1C,AluSxchr1:174864550-174865270:+.alignment
chr1:174867211-174868133:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluSx,AluSg,AluSx1,MIRbchr1:174867211-174868133:+.alignment
chr1:174869331-174869546:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicTHE1Dchr1:174869331-174869546:+.alignment
chr1:174885490-174885667:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluJbchr1:174885490-174885667:+.alignment
chr1:174887920-174888684:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicCharlie4a,AluSz,AluSz6chr1:174887920-174888684:+.alignment
chr1:174903737-174907584:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicL1M3f,AluSx1,AluSp,AluJb,AluJr,AluJo,AluSzchr1:174903737-174907584:+.alignment
chr1:174909274-174910107:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicL1M3f,AluY,AluJbchr1:174909274-174910107:+.alignment
chr1:174972549-174972751:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluSxchr1:174972549-174972751:+.alignment
chr1:174972549-174972751:+ENST00000485114.1ENSG00000152061.20RABGAP1LncRNA_intronicAluSxchr1:174972549-174972751:+.alignment
chr1:174984556-174985286:+ENST00000367686.6ENSG00000152061.20RABGAP1LncRNA_intronicAluJb,AluSxchr1:174984556-174985286:+.alignment
chr1:174984556-174985286:+ENST00000461613.1ENSG00000152061.20RABGAP1LncRNA_intronicAluJb,AluSxchr1:174984556-174985286:+.alignment
chr1:174984556-174985286:+ENST00000485114.1ENSG00000152061.20RABGAP1LncRNA_intronicAluJb,AluSxchr1:174984556-174985286:+.alignment


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2. Tumor-specific enriched editing regions for RABGAP1L


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot

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3. Enriched editing regions and immune related genes for RABGAP1L


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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4. Enriched editing regions and immune related splicing for RABGAP1L


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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5. Enriched editing regions and immune infiltration for RABGAP1L


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr1:174492581-174493798:+ESCAEERMacrophages_M22.0173e-020.3416image
chr1:174831966-174834331:+ESCAEERB_cells_naive7.7808e-03-0.2687image
chr1:174903737-174907584:+ESCAEERDendritic_cells_activated3.4565e-020.2282image
ENSG00000152061.20,RABGAP1LESCAEAGT_cells_CD4_memory_activated9.9143e-030.2299image
chr1:174492581-174493798:+LAMLEERDendritic_cells_resting1.6589e-020.5162image
chr1:174869331-174869546:+LAMLEERNK_cells_resting2.2835e-03-0.3304image
ENSG00000152061.20,RABGAP1LLAMLEAGNK_cells_resting2.9758e-03-0.2557image
ENSG00000152061.20,RABGAP1LLUADEAGT_cells_CD4_naive4.1482e-02-0.4596image
ENSG00000152061.20,RABGAP1LOVEAGPlasma_cells2.3577e-030.4376image
chr1:174492581-174493798:+STADEERDendritic_cells_activated3.1321e-020.2133image
chr1:174503429-174504072:+STADEERT_cells_CD4_memory_activated9.1931e-050.3690image
chr1:174818598-174819141:+STADEERNK_cells_activated1.4092e-020.3761image
chr1:174831966-174834331:+STADEERMast_cells_activated1.9419e-030.2403image
chr1:174856145-174856891:+STADEERT_cells_CD4_memory_activated1.3177e-030.4742image
chr1:174903737-174907584:+STADEERNK_cells_activated3.3576e-02-0.1687image
ENSG00000152061.20,RABGAP1LSTADEAGMonocytes4.2860e-02-0.1334image


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6. Enriched editing regions and immune gene sets for RABGAP1L


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000152061.20,RABGAP1LBRCAGSVA_HALLMARK_HEDGEHOG_SIGNALINGEAG1.7917e-020.4224image
ENSG00000152061.20,RABGAP1LESCAGSVA_HALLMARK_BILE_ACID_METABOLISMEAG4.9442e-03-0.2499image
chr1:174903737-174907584:+ESCAGSVA_HALLMARK_UV_RESPONSE_UPEER8.8502e-030.2807image
chr1:174492581-174493798:+ESCAGSVA_HALLMARK_CHOLESTEROL_HOMEOSTASISEER1.0201e-020.3752image
chr1:174831966-174834331:+ESCAGSVA_HALLMARK_BILE_ACID_METABOLISMEER2.2665e-03-0.3064image
chr1:174903737-174907584:+OVGSVA_HALLMARK_FATTY_ACID_METABOLISMEER4.1327e-030.5432image
ENSG00000152061.20,RABGAP1LOVGSVA_HALLMARK_FATTY_ACID_METABOLISMEAG1.6295e-020.3524image
ENSG00000152061.20,RABGAP1LSTADGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEAG4.7454e-02-0.1306image
chr1:174856145-174856891:+STADGSVA_HALLMARK_FATTY_ACID_METABOLISMEER1.9243e-030.4598image
chr1:174903737-174907584:+STADGSVA_HALLMARK_PANCREAS_BETA_CELLSEER7.2462e-030.2122image
chr1:174503429-174504072:+STADGSVA_HALLMARK_UV_RESPONSE_UPEER8.0397e-030.2550image


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7. Enriched editing regions and drugs for RABGAP1L


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000152061.20,RABGAP1LESCADocetaxelEAG1.6598e-02-0.2139image
chr1:174903737-174907584:+ESCAErlotinibEER1.9438e-02-0.2516image
chr1:174492581-174493798:+ESCADMOGEER1.0569e-02-0.3735image
chr1:174831966-174834331:+ESCAJW.7.52.1EER2.9548e-020.2211image
ENSG00000152061.20,RABGAP1LLAMLBI.2536EAG2.9845e-030.2556image
chr1:174492581-174493798:+LAMLCCT018159EER2.5741e-020.4853image
chr1:174831966-174834331:+LAMLDoxorubicinEER3.0023e-020.2653image
ENSG00000152061.20,RABGAP1LLUADJNJ.26854165EAG3.8539e-02-0.4656image
chr1:174903737-174907584:+OVBAY.61.3606EER1.2853e-040.6810image
ENSG00000152061.20,RABGAP1LOVCCT007093EAG9.2157e-030.3799image
ENSG00000152061.20,RABGAP1LSTADBMS.708163EAG2.6628e-020.1459image
chr1:174856145-174856891:+STADBMS.708163EER3.5978e-02-0.3208image
chr1:174818598-174819141:+STADABT.263EER2.4716e-020.3462image
chr1:174903737-174907584:+STADAxitinibEER2.8891e-02-0.1733image
chr1:174503429-174504072:+STADA.770041EER6.5815e-03-0.2624image
chr1:174831966-174834331:+STADBMS.708163EER1.2135e-020.1955image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType