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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: VOPP1 (ImmuneEditome ID:81552)

1. Gene summary of enriched editing regions for VOPP1

check button Gene summary
Gene informationGene symbol

VOPP1

Gene ID

81552

GeneSynonymsECOP|GASP|WBP1L2
GeneCytomap

7p11.2

GeneTypeprotein-coding
GeneDescriptionvesicular, overexpressed in cancer, prosurvival protein 1|EGFR-coamplified and overexpressed protein|Glioblastoma-amplified secreted protein|VOPP1, WBP1/VOPP1 family member|hypothetical protein DKFZp564K0822|putative NF-kappa-B-activating protein 055N
GeneModificationdate20230329
UniprotIDQ96AW1;C9JIM1;C9J548;C9JQ18;C9JTY8;C9JF99;C9J827;C9JVH1
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr7:55454226-55459659:-ENST00000462326.4ENSG00000154978.11VOPP1ncRNA_intronicL1MA4A,L1PA7chr7:55454226-55459659:-.alignment
chr7:55461448-55461737:-ENST00000462326.4ENSG00000154978.11VOPP1ncRNA_intronicAluSg,L1MA4Achr7:55461448-55461737:-.alignment
chr7:55508317-55509056:-ENST00000453112.4ENSG00000154978.11VOPP1ncRNA_intronicL4_A_Mam,AluJrchr7:55508317-55509056:-.alignment
chr7:55508317-55509056:-ENST00000462326.4ENSG00000154978.11VOPP1ncRNA_intronicL4_A_Mam,AluJrchr7:55508317-55509056:-.alignment
chr7:55508317-55509056:-ENST00000471168.1ENSG00000154978.11VOPP1ncRNA_intronicL4_A_Mam,AluJrchr7:55508317-55509056:-.alignment
chr7:55508317-55509056:-ENST00000481197.4ENSG00000154978.11VOPP1ncRNA_intronicL4_A_Mam,AluJrchr7:55508317-55509056:-.alignment
chr7:55542632-55543718:-ENST00000453112.4ENSG00000154978.11VOPP1ncRNA_intronicAluY,L1MA4,AluSzchr7:55542632-55543718:-.alignment
chr7:55542632-55543718:-ENST00000462326.4ENSG00000154978.11VOPP1ncRNA_intronicAluY,L1MA4,AluSzchr7:55542632-55543718:-.alignment
chr7:55542632-55543718:-ENST00000471168.1ENSG00000154978.11VOPP1ncRNA_intronicAluY,L1MA4,AluSzchr7:55542632-55543718:-.alignment


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2. Tumor-specific enriched editing regions for VOPP1


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot
chr7:55454226-55459659:-COADEER4.9370e-04image
ENSG00000154978.11,VOPP1COADEAG4.8981e-04image
chr7:55454226-55459659:-KIRCEER3.6958e-03image
ENSG00000154978.11,VOPP1KIRCEAG3.8793e-03image
chr7:55454226-55459659:-LUADEER4.2244e-02image
ENSG00000154978.11,VOPP1LUADEAG4.2513e-02image
chr7:55454226-55459659:-LUSCEER2.9723e-04image
ENSG00000154978.11,VOPP1LUSCEAG2.9748e-04image
chr7:55454226-55459659:-UCECEER2.7172e-06image
ENSG00000154978.11,VOPP1UCECEAG2.7077e-06image


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot
chr7:55454226-55459659:-KIRPPathEER3.5737e-023.4388e-030.1874image
ENSG00000154978.11,VOPP1KIRPPathEAG3.5564e-023.4187e-030.1875image
chr7:55454226-55459659:-LUADPathEER3.0194e-041.4555e-040.1740image
ENSG00000154978.11,VOPP1LUADPathEAG2.9226e-041.4310e-040.1742image
chr7:55454226-55459659:-READPathEER2.7548e-029.4312e-03-0.2371image
ENSG00000154978.11,VOPP1READPathEAG2.7557e-029.4322e-03-0.2371image


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
chr7:55454226-55459659:-HNSCEER8.2100e-035.9920e-032.3145e+01image
ENSG00000154978.11,VOPP1HNSCEAG8.2100e-035.9547e-032.3210e+01image
ENSG00000154978.11,VOPP1LIHCEAG3.9913e-023.6735e-024.2726e-02image

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3. Enriched editing regions and immune related genes for VOPP1


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr7:55454226-55459659:-LUADEERENSG00000139190,VAMP1-0.42587.6415e-181.1046e-21-0.4221imageNBCCIP;CSTF2T;DDX54;DKC1;EIF4A3;ELAVL1;FBL;FMR1;FXR1;HNRNPA1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS1;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1NAMacrophages_M2GSVA_HALLMARK_ADIPOGENESIS
chr7:55454226-55459659:-COADEERENSG00000144504,ANKMY1-0.30627.1163e-054.3834e-130.4206imageNBCCIP;CSTF2T;DDX54;DKC1;EIF4A3;ELAVL1;FBL;FMR1;FXR1;HNRNPA1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS1;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1NADendritic_cells_activatedGSVA_HALLMARK_XENOBIOTIC_METABOLISM
chr7:55454226-55459659:-COADEERENSG00000207129,RNA5SP187-0.25501.5281e-031.5868e-120.4113imageNNNADendritic_cells_activatedGSVA_HALLMARK_UV_RESPONSE_UP
chr7:55454226-55459659:-COADEERENSG00000250067,YJEFN3-0.24123.7754e-032.7088e-120.4073imageNBCCIP;CSTF2T;DDX54;DKC1;EIF4A3;ELAVL1;FBL;FMR1;FXR1;HNRNPA1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS1;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1YJEFN3Dendritic_cells_activatedGSVA_HALLMARK_PROTEIN_SECRETION
chr7:55454226-55459659:-COADEERENSG00000279392,AL158801.10.23704.1907e-031.9970e-120.4096imageNNNAMacrophages_M0GSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALING
chr7:55454226-55459659:-COADEERENSG00000268836,LA16c-OS12.2-0.22797.5986e-031.6634e-200.5231imageNCSTF2T;DDX54;ELAVL1;FMR1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS1;NOP56;NOP58;RBM10;TAF15;TIA1;U2AF2NADendritic_cells_activatedGSVA_HALLMARK_PROTEIN_SECRETION
chr7:55454226-55459659:-COADEERENSG00000237973,RP5-857K21.6-0.21511.2812e-024.1375e-120.4041imageNNNADendritic_cells_activatedGSVA_HALLMARK_PROTEIN_SECRETION
chr7:55454226-55459659:-COADEERENSG00000267523,CTD-2537I9.12-0.20781.6701e-024.7511e-300.6180imageNDKC1;ELAVL1;FBL;NOP56;TAF15;UPF1NADendritic_cells_activatedGSVA_HALLMARK_ADIPOGENESIS
chr7:55454226-55459659:-COADEERENSG00000093217,XYLB0.17814.7957e-024.3186e-220.5411imageNBCCIP;CSTF2T;DDX54;DKC1;EIF4A3;ELAVL1;FBL;FMR1;HNRNPA1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS2;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1NADendritic_cells_activatedGSVA_HALLMARK_P53_PATHWAY
chr7:55454226-55459659:-LUSCEERENSG00000268087,CTC-429P9.2-0.44591.1965e-192.3253e-21-0.4157imageNEIF4A3;ELAVL1;NOP56;TAF15;U2AF2;UPF1NAT_cells_regulatory_(Tregs)GSVA_HALLMARK_GLYCOLYSIS

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4. Enriched editing regions and immune related splicing for VOPP1


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr7:55454226-55459659:-
COADEERIRENSG00000105397.9chr1910364850:10365048:10365516:10365808-0.26014.4810e-031.0416e-140.4522imageNBCCIP;CSTF2T;DDX54;DKC1;EIF4A3;ELAVL1;FBL;FMR1;FXR1;HNRNPA1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS1;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1TYK2Dendritic_cells_activatedGSVA_HALLMARK_UV_RESPONSE_UP
ENSG00000154978.11,VOPP1
COADEAGIRENSG00000111653.15chr126652661:6652767:6652935:6653050-0.38264.6521e-073.1081e-11-0.4003imageNAIFM1;AUH;BCCIP;BUD13;CNBP;CPSF6;CSTF2T;DDX3X;DDX42;DDX54;DGCR8;DKC1;EIF4A3;EIF4G2;ELAVL1;FAM120A;FBL;FMR1;FUS;GTF2F1;HNRNPA1;HNRNPA2B1;HNRNPC;HNRNPK;HNRNPL;HNRNPM;IGF2BP1;IGF2BP2;IGF2BP3;ILF3;LIN28;LIN28A;LIN28B;MOV10;NOP56;NOP58;NUMA1;PCBP2;PRPF8;PTBP1;RBFOX2;RBM10;RBM27;SF3A3;SF3B4;SMNDC1;SND1;SRSF1;SRSF3;TAF15;TARDBP;TIA1;TIAL1;TROVE2;U2AF2;UPF1;YTHDF1ING4B_cells_memoryGSVA_HALLMARK_PROTEIN_SECRETION
chr7:55454226-55459659:-
COADEERIRENSG00000160190.9chr2142579470:42579800:42580344:42581440-0.28051.3124e-031.3090e-110.4015imageNCSTF2T;DDX54;DKC1;EIF4A3;ELAVL1;FBL;FMR1;HNRNPA1;HNRNPC;IGF2BP2;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;U2AF2;UPF1NADendritic_cells_activatedGSVA_HALLMARK_PROTEIN_SECRETION
ENSG00000154978.11,VOPP1
COADEAGIRENSG00000104885.13chr192225387:2225452:2226182:2227127-0.26783.3583e-031.2595e-110.4061imageNADAR;AIFM1;AUH;BCCIP;BUD13;CELF2;CNBP;CPSF6;CSTF2T;DDX3X;DDX42;DDX54;DGCR8;DHX9;DKC1;EIF4A3;EIF4G2;ELAVL1;EWSR1;FAM120A;FBL;FMR1;FTO;FUS;FXR2;GTF2F1;HNRNPA1;HNRNPA2B1;HNRNPC;HNRNPK;HNRNPL;HNRNPM;IGF2BP1;IGF2BP2;IGF2BP3;ILF3;KHDRBS3;LARP7;LIN28;LIN28A;LIN28B;MBNL2;METTL14;MOV10;MSI1;MSI2;NOP56;NOP58;NUMA1;PCBP2;PRPF8;PTBP1;QKI;RBFOX2;RBM10;RBM22;RBM27;RBM5;SF3A3;SF3B4;SLBP;SMNDC1;SND1;SRSF1;SRSF3;TAF15;TARDBP;TIA1;TIAL1;TNRC6A;TROVE2;U2AF2;UPF1;YTHDC1;YTHDF1NAEosinophilsGSVA_HALLMARK_UV_RESPONSE_UP
chr7:55454226-55459659:-
COADEERIRENSG00000129235.6chr176640757:6641227:6641752:6641834-0.35625.9531e-061.8025e-140.4447imageNCSTF2T;DDX54;EIF4A3;ELAVL1;FBL;FMR1;HNRNPA1;HNRNPU;IGF2BP2;KHDRBS1;KHDRBS2;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1TXNDC17EosinophilsGSVA_HALLMARK_UV_RESPONSE_UP
ENSG00000154978.11,VOPP1
COADEAGIRENSG00000124574.10chr643446276:43446446:43447247:43447408-0.23861.5932e-024.7736e-130.4287imageNADAR;AIFM1;AUH;BCCIP;BUD13;CELF2;CNBP;CPSF6;CSTF2T;DDX3X;DDX42;DDX54;DGCR8;DHX9;DKC1;EIF4A3;EIF4G2;ELAVL1;EWSR1;FAM120A;FBL;FMR1;FTO;FUS;FXR2;GTF2F1;HNRNPA1;HNRNPA2B1;HNRNPC;HNRNPK;HNRNPL;HNRNPM;IGF2BP1;IGF2BP2;IGF2BP3;ILF3;LARP7;LIN28;LIN28A;LIN28B;MOV10;MSI1;NOP56;NOP58;NUMA1;PCBP2;PRPF8;PTBP1;RBFOX2;RBM10;RBM22;RBM27;SF3A3;SF3B4;SMNDC1;SND1;SRSF1;SRSF3;TAF15;TARDBP;TIA1;TIAL1;TNRC6A;TROVE2;U2AF2;UPF1;YTHDC1;YTHDF1NAEosinophilsGSVA_HALLMARK_ADIPOGENESIS
ENSG00000154978.11,VOPP1
COADEAGIRENSG00000182004.8chr1203861614:203861713:203862195:203862222-0.27713.3966e-032.6124e-220.5435imageNAIFM1;AUH;BCCIP;BUD13;CELF2;CNBP;CPSF6;CSTF2T;DDX3X;DDX42;DDX54;DGCR8;DHX9;DKC1;EIF4A3;EIF4G2;ELAVL1;ELAVL3;FAM120A;FBL;FMR1;FTO;FUS;FXR2;GTF2F1;HNRNPA1;HNRNPA2B1;HNRNPC;HNRNPD;HNRNPK;HNRNPL;HNRNPM;IGF2BP1;IGF2BP2;IGF2BP3;ILF3;LARP7;LIN28;LIN28A;LIN28B;MOV10;MSI1;MSI2;NOP56;NOP58;NUMA1;PCBP2;PRPF8;PTBP1;QKI;RBFOX2;RBM10;RBM22;RBM27;RBM47;SF3A3;SF3B4;SLBP;SMNDC1;SND1;SRSF1;SRSF3;TAF15;TARDBP;TIA1;TIAL1;TNRC6A;TROVE2;U2AF2;UPF1;YTHDC1NADendritic_cells_activatedGSVA_HALLMARK_UV_RESPONSE_UP
chr7:55454226-55459659:-
COADEERIRENSG00000133030.15chr1717175292:17175412:17176425:17176512-0.28591.4040e-032.5098e-160.4704imageNBCCIP;CSTF2T;DDX54;DKC1;EIF4A3;ELAVL1;FBL;FMR1;FXR1;HNRNPA1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS1;KHDRBS2;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1NADendritic_cells_activatedGSVA_HALLMARK_UV_RESPONSE_UP
chr7:55454226-55459659:-
COADEERIRENSG00000120832.5chr12106985114:106985225:106986968:106987090-0.31616.1108e-064.0428e-10-0.4108imageNBCCIP;CSTF2T;DDX54;EIF4A3;ELAVL1;FBL;FMR1;FXR1;HNRNPA1;HNRNPC;HNRNPU;IGF2BP2;KHDRBS1;KHDRBS2;NOP56;NOP58;PRPF8;RBFOX2;RBM10;TAF15;TIA1;U2AF2;UPF1NAMacrophages_M1GSVA_HALLMARK_UV_RESPONSE_UP
ENSG00000154978.11,VOPP1
COADEAGESENSG00000176731.7chr885214555:85214631:85214920:85215037:85217385:85217502-0.22544.1613e-026.7432e-17-0.4775imageNADAR;AIFM1;AUH;BCCIP;BUD13;CELF2;CPSF6;CSTF2T;DDX3X;DDX42;DDX54;DGCR8;DHX9;EIF4A3;EIF4G2;ELAVL1;ELAVL3;FAM120A;FBL;FMR1;FUS;GTF2F1;HNRNPA1;HNRNPA2B1;HNRNPC;HNRNPK;HNRNPL;HNRNPM;IGF2BP1;IGF2BP2;IGF2BP3;ILF3;KHDRBS3;LIN28;LIN28A;LIN28B;MOV10;NOP56;NOP58;NUMA1;PCBP2;PRPF8;PTBP1;RBFOX2;RBM10;RBM22;RBM27;SF3A3;SF3B4;SMNDC1;SND1;SRSF1;SRSF3;TAF15;TARDBP;TIA1;TNRC6A;TROVE2;U2AF2;UPF1NANK_cells_restingGSVA_HALLMARK_BILE_ACID_METABOLISM

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5. Enriched editing regions and immune infiltration for VOPP1


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr7:55454226-55459659:-BLCAEERT_cells_CD4_memory_resting5.1501e-03-0.1486image
ENSG00000154978.11,VOPP1BLCAEAGT_cells_CD4_memory_resting5.2811e-03-0.1482image
chr7:55454226-55459659:-BRCAEERT_cells_CD4_memory_resting2.5964e-07-0.1587image
ENSG00000154978.11,VOPP1BRCAEAGB_cells_naive2.6882e-07-0.1585image
chr7:55454226-55459659:-CESCEERDendritic_cells_activated6.0369e-050.2374image
ENSG00000154978.11,VOPP1CESCEAGDendritic_cells_activated6.0419e-050.2373image
chr7:55454226-55459659:-CHOLEERT_cells_CD4_naive5.5796e-050.6423image
ENSG00000154978.11,VOPP1CHOLEAGT_cells_CD4_naive5.5796e-050.6423image
chr7:55454226-55459659:-COADEERDendritic_cells_activated9.6448e-050.2342image
ENSG00000154978.11,VOPP1COADEAGDendritic_cells_activated9.7388e-050.2341image
chr7:55454226-55459659:-DLBCEERMonocytes8.3153e-040.4758image
ENSG00000154978.11,VOPP1DLBCEAGMonocytes8.1114e-040.4767image
chr7:55454226-55459659:-ESCAEERT_cells_CD4_memory_resting3.5577e-06-0.3593image
chr7:55461448-55461737:-ESCAEERT_cells_CD4_memory_resting2.0969e-02-0.3135image
ENSG00000154978.11,VOPP1ESCAEAGT_cells_CD4_memory_resting3.4425e-06-0.3598image
chr7:55454226-55459659:-GBMEERT_cells_follicular_helper2.1237e-03-0.2412image
ENSG00000154978.11,VOPP1GBMEAGT_cells_follicular_helper2.4847e-03-0.2376image
chr7:55454226-55459659:-HNSCEERT_cells_regulatory_(Tregs)4.6992e-07-0.2440image
ENSG00000154978.11,VOPP1HNSCEAGT_cells_regulatory_(Tregs)4.7156e-07-0.2440image
chr7:55454226-55459659:-KICHEERMacrophages_M01.4584e-020.3089image
ENSG00000154978.11,VOPP1KICHEAGMacrophages_M01.4653e-020.3087image
chr7:55454226-55459659:-KIRCEERDendritic_cells_activated1.4511e-050.2204image
ENSG00000154978.11,VOPP1KIRCEAGDendritic_cells_activated1.2975e-050.2216image
chr7:55454226-55459659:-KIRPEERNK_cells_resting2.2174e-030.1858image
ENSG00000154978.11,VOPP1KIRPEAGNK_cells_resting2.2162e-030.1858image
chr7:55454226-55459659:-LAMLEERMast_cells_resting7.2539e-030.2860image
ENSG00000154978.11,VOPP1LAMLEAGMast_cells_resting4.4347e-030.3023image
chr7:55454226-55459659:-LGGEERT_cells_CD4_naive1.4091e-050.1895image
ENSG00000154978.11,VOPP1LGGEAGT_cells_CD4_naive1.3688e-050.1898image
chr7:55454226-55459659:-LIHCEERT_cells_CD4_naive4.1580e-020.1241image
ENSG00000154978.11,VOPP1LIHCEAGT_cells_CD4_naive4.1305e-020.1240image
chr7:55454226-55459659:-LUADEERT_cells_CD4_memory_resting2.1446e-03-0.1414image
ENSG00000154978.11,VOPP1LUADEAGT_cells_CD4_memory_resting2.1526e-03-0.1413image
chr7:55454226-55459659:-LUSCEERT_cells_gamma_delta1.4370e-020.1120image
ENSG00000154978.11,VOPP1LUSCEAGT_cells_gamma_delta1.4401e-020.1120image
chr7:55454226-55459659:-MESOEERB_cells_naive2.9814e-03-0.3341image
ENSG00000154978.11,VOPP1MESOEAGB_cells_naive2.9825e-03-0.3341image
chr7:55454226-55459659:-OVEERT_cells_CD81.6561e-040.2248image
ENSG00000154978.11,VOPP1OVEAGT_cells_CD81.3936e-040.2273image
chr7:55454226-55459659:-PAADEERNeutrophils5.4299e-060.3389image
ENSG00000154978.11,VOPP1PAADEAGNeutrophils5.4327e-060.3389image
chr7:55454226-55459659:-PRADEERT_cells_regulatory_(Tregs)3.2241e-04-0.1770image
ENSG00000154978.11,VOPP1PRADEAGT_cells_regulatory_(Tregs)3.1974e-04-0.1771image
chr7:55454226-55459659:-READEERMacrophages_M04.2105e-03-0.2942image
ENSG00000154978.11,VOPP1READEAGMacrophages_M04.2487e-03-0.2939image
chr7:55454226-55459659:-SARCEEREosinophils3.4673e-030.1888image
ENSG00000154978.11,VOPP1SARCEAGEosinophils3.4680e-030.1888image
chr7:55454226-55459659:-SKCMEERT_cells_regulatory_(Tregs)1.3250e-04-0.2644image
ENSG00000154978.11,VOPP1SKCMEAGT_cells_regulatory_(Tregs)1.3252e-04-0.2644image
chr7:55454226-55459659:-STADEERT_cells_CD4_memory_resting3.8253e-06-0.2373image
ENSG00000154978.11,VOPP1STADEAGT_cells_CD4_memory_resting2.1426e-06-0.2432image
chr7:55454226-55459659:-TGCTEERMacrophages_M29.6038e-040.3039image
ENSG00000154978.11,VOPP1TGCTEAGMacrophages_M29.6038e-040.3039image
chr7:55454226-55459659:-THCAEERDendritic_cells_activated4.3988e-030.1360image
ENSG00000154978.11,VOPP1THCAEAGDendritic_cells_activated4.2091e-030.1367image
chr7:55454226-55459659:-THYMEERMast_cells_resting1.3158e-050.4372image
ENSG00000154978.11,VOPP1THYMEAGMast_cells_resting1.3158e-050.4372image
chr7:55454226-55459659:-UCECEERT_cells_CD4_memory_resting9.3445e-03-0.2043image
ENSG00000154978.11,VOPP1UCECEAGT_cells_CD4_memory_resting9.5113e-03-0.2038image
chr7:55454226-55459659:-UCSEERDendritic_cells_activated1.4991e-020.3389image
ENSG00000154978.11,VOPP1UCSEAGDendritic_cells_activated1.4991e-020.3389image


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6. Enriched editing regions and immune gene sets for VOPP1


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot
chr7:55454226-55459659:-STADEER3.3928e-02image2.3970e-030.1572image
ENSG00000154978.11,VOPP1STADEAG3.6444e-02image2.6119e-030.1558image


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot
chr7:55454226-55459659:-BRCAEER4.5668e-170.25611.5343e-070.16174.9778e-190.27124.0016e-040.1095image
ENSG00000154978.11,VOPP1BRCAEAG5.5604e-170.25541.5348e-070.16176.2206e-190.27054.9764e-040.1077image
ENSG00000154978.11,VOPP1ESCAEAG3.7992e-140.55503.0286e-030.23444.2447e-120.51544.2696e-030.2262image
chr7:55454226-55459659:-ESCAEER3.3221e-140.55612.9033e-030.23544.1076e-120.51574.1008e-030.2272image
chr7:55454226-55459659:-LUADEER6.1190e-050.18401.5563e-020.11165.4775e-040.15903.9513e-090.2675image
ENSG00000154978.11,VOPP1LUADEAG6.1021e-050.18401.5621e-020.11165.4529e-040.15913.6632e-090.2681image
chr7:55454226-55459659:-LUSCEER8.0803e-100.27651.0396e-020.11721.8109e-060.21651.1881e-030.1480image
ENSG00000154978.11,VOPP1LUSCEAG8.1185e-100.27651.0333e-020.11731.8201e-060.21651.1921e-030.1480image
ENSG00000154978.11,VOPP1STADEAG1.1791e-140.38641.3563e-030.16578.4950e-110.32874.4114e-100.3166image
chr7:55454226-55459659:-STADEER8.1744e-150.38851.0111e-030.17007.1819e-110.32992.6873e-100.3203image


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000154978.11,VOPP1ACCGSVA_HALLMARK_NOTCH_SIGNALINGEAG3.8036e-020.3521image
chr7:55454226-55459659:-ACCGSVA_HALLMARK_NOTCH_SIGNALINGEER3.8036e-020.3521image
ENSG00000154978.11,VOPP1BLCAGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEAG1.7748e-040.1983image
chr7:55454226-55459659:-BLCAGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEER1.6595e-040.1991image
ENSG00000154978.11,VOPP1BRCAGSVA_HALLMARK_GLYCOLYSISEAG5.6913e-340.3639image
chr7:55454226-55459659:-BRCAGSVA_HALLMARK_GLYCOLYSISEER2.7787e-340.3655image
chr7:55454226-55459659:-CESCGSVA_HALLMARK_HYPOXIAEER2.5073e-070.3023image
ENSG00000154978.11,VOPP1CESCGSVA_HALLMARK_HYPOXIAEAG2.5080e-070.3023image
chr7:55454226-55459659:-COADGSVA_HALLMARK_MTORC1_SIGNALINGEER1.5388e-060.2866image
ENSG00000154978.11,VOPP1COADGSVA_HALLMARK_MTORC1_SIGNALINGEAG1.6142e-060.2861image
ENSG00000154978.11,VOPP1DLBCGSVA_HALLMARK_HEME_METABOLISMEAG3.0756e-02-0.3189image
chr7:55454226-55459659:-DLBCGSVA_HALLMARK_HEME_METABOLISMEER2.9858e-02-0.3206image
chr7:55454226-55459659:-ESCAGSVA_HALLMARK_MYC_TARGETS_V1EER7.4849e-090.4397image
chr7:55461448-55461737:-ESCAGSVA_HALLMARK_PEROXISOMEEER9.4962e-030.3499image
ENSG00000154978.11,VOPP1ESCAGSVA_HALLMARK_MYC_TARGETS_V1EAG9.7435e-090.4366image
chr7:55454226-55459659:-GBMGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEER1.5774e-090.4544image
ENSG00000154978.11,VOPP1GBMGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEAG1.2322e-090.4571image
chr7:55454226-55459659:-HNSCGSVA_HALLMARK_P53_PATHWAYEER1.6830e-100.3065image
ENSG00000154978.11,VOPP1HNSCGSVA_HALLMARK_P53_PATHWAYEAG1.6914e-100.3065image
chr7:55454226-55459659:-KICHGSVA_HALLMARK_DNA_REPAIREER6.1775e-03-0.3441image
ENSG00000154978.11,VOPP1KICHGSVA_HALLMARK_DNA_REPAIREAG6.2038e-03-0.3439image
chr7:55454226-55459659:-KIRCGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER5.6266e-250.4959image
ENSG00000154978.11,VOPP1KIRCGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG9.1608e-250.4939image
chr7:55454226-55459659:-KIRPGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER7.1088e-070.2969image
ENSG00000154978.11,VOPP1KIRPGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG7.0579e-070.2969image
ENSG00000154978.11,VOPP1LAMLGSVA_HALLMARK_APICAL_SURFACEEAG1.2311e-03-0.3409image
chr7:55454226-55459659:-LAMLGSVA_HALLMARK_APICAL_SURFACEEER1.1505e-03-0.3429image
ENSG00000154978.11,VOPP1LGGGSVA_HALLMARK_ALLOGRAFT_REJECTIONEAG1.0558e-05-0.1922image
chr7:55454226-55459659:-LGGGSVA_HALLMARK_ALLOGRAFT_REJECTIONEER1.0960e-05-0.1919image
chr7:55454226-55459659:-LIHCGSVA_HALLMARK_ESTROGEN_RESPONSE_LATEEER5.6557e-070.2988image
ENSG00000154978.11,VOPP1LIHCGSVA_HALLMARK_ESTROGEN_RESPONSE_LATEEAG5.4531e-070.2987image
ENSG00000154978.11,VOPP1LUADGSVA_HALLMARK_ADIPOGENESISEAG7.9118e-210.4138image
chr7:55454226-55459659:-LUADGSVA_HALLMARK_ADIPOGENESISEER8.1698e-210.4137image
ENSG00000154978.11,VOPP1LUSCGSVA_HALLMARK_GLYCOLYSISEAG1.8559e-170.3759image
chr7:55454226-55459659:-LUSCGSVA_HALLMARK_GLYCOLYSISEER1.8771e-170.3759image
ENSG00000154978.11,VOPP1MESOGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEAG3.4100e-030.3297image
chr7:55454226-55459659:-MESOGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEER3.4055e-030.3297image
chr7:55461448-55461737:-OVGSVA_HALLMARK_DNA_REPAIREER4.8578e-020.3694image
ENSG00000154978.11,VOPP1OVGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEAG1.5344e-150.4554image
chr7:55454226-55459659:-OVGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEER1.5791e-150.4553image
chr7:55454226-55459659:-PAADGSVA_HALLMARK_KRAS_SIGNALING_DNEER3.8391e-030.2194image
ENSG00000154978.11,VOPP1PAADGSVA_HALLMARK_KRAS_SIGNALING_DNEAG3.8598e-030.2192image
ENSG00000154978.11,VOPP1PCPGGSVA_HALLMARK_HEME_METABOLISMEAG3.6330e-050.3223image
chr7:55454226-55459659:-PCPGGSVA_HALLMARK_HEME_METABOLISMEER3.6271e-050.3223image
chr7:55454226-55459659:-PRADGSVA_HALLMARK_ADIPOGENESISEER1.3084e-090.2942image
ENSG00000154978.11,VOPP1PRADGSVA_HALLMARK_ADIPOGENESISEAG1.3519e-090.2940image
ENSG00000154978.11,VOPP1READGSVA_HALLMARK_GLYCOLYSISEAG1.6644e-070.5110image
chr7:55454226-55459659:-READGSVA_HALLMARK_GLYCOLYSISEER1.6689e-070.5109image
ENSG00000154978.11,VOPP1SARCGSVA_HALLMARK_PROTEIN_SECRETIONEAG1.4984e-030.2047image
chr7:55454226-55459659:-SARCGSVA_HALLMARK_PROTEIN_SECRETIONEER1.5052e-030.2046image
ENSG00000154978.11,VOPP1SKCMGSVA_HALLMARK_ALLOGRAFT_REJECTIONEAG7.3741e-08-0.3659image
chr7:55454226-55459659:-SKCMGSVA_HALLMARK_ALLOGRAFT_REJECTIONEER7.3754e-08-0.3659image
chr7:55454226-55459659:-STADGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER3.0947e-210.4643image
ENSG00000154978.11,VOPP1STADGSVA_HALLMARK_UV_RESPONSE_UPEAG8.8916e-210.4595image
chr7:55454226-55459659:-TGCTGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER3.5381e-050.3756image
ENSG00000154978.11,VOPP1TGCTGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG3.5381e-050.3756image
chr7:55454226-55459659:-THCAGSVA_HALLMARK_PROTEIN_SECRETIONEER7.5682e-090.2719image
ENSG00000154978.11,VOPP1THCAGSVA_HALLMARK_PROTEIN_SECRETIONEAG5.3148e-090.2746image
chr7:55454226-55459659:-THYMGSVA_HALLMARK_KRAS_SIGNALING_DNEER2.9525e-030.3066image
ENSG00000154978.11,VOPP1THYMGSVA_HALLMARK_KRAS_SIGNALING_DNEAG2.9525e-030.3066image
chr7:55454226-55459659:-UCECGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER2.6215e-040.2839image
ENSG00000154978.11,VOPP1UCECGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG2.7010e-040.2834image
ENSG00000154978.11,VOPP1UCSGSVA_HALLMARK_SPERMATOGENESISEAG8.9034e-040.4512image
chr7:55454226-55459659:-UCSGSVA_HALLMARK_SPERMATOGENESISEER8.9034e-040.4512image


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7. Enriched editing regions and drugs for VOPP1


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000154978.11,VOPP1BLCAA.443654EAG2.6412e-03-0.1596image
chr7:55454226-55459659:-BLCAA.443654EER2.4084e-03-0.1610image
ENSG00000154978.11,VOPP1BRCAGDC0941EAG2.5570e-220.2947image
chr7:55461448-55461737:-BRCADasatinibEER9.1472e-03-0.5203image
chr7:55454226-55459659:-BRCAGDC0941EER2.2750e-220.2950image
ENSG00000154978.11,VOPP1CESCFTI.277EAG3.6537e-07-0.2983image
chr7:55454226-55459659:-CESCFTI.277EER3.6505e-07-0.2984image
ENSG00000154978.11,VOPP1CHOLGW843682XEAG1.4793e-030.5309image
chr7:55454226-55459659:-CHOLGW843682XEER1.4793e-030.5309image
chr7:55454226-55459659:-COADBI.D1870EER6.9657e-03-0.1633image
ENSG00000154978.11,VOPP1COADBI.D1870EAG6.9467e-03-0.1633image
chr7:55454226-55459659:-DLBCErlotinibEER6.0929e-03-0.3985image
ENSG00000154978.11,VOPP1DLBCErlotinibEAG6.3461e-03-0.3967image
chr7:55461448-55461737:-ESCAJW.7.52.1EER7.4917e-03-0.3600image
ENSG00000154978.11,VOPP1ESCADocetaxelEAG3.9703e-10-0.4716image
chr7:55454226-55459659:-ESCADocetaxelEER3.4072e-10-0.4732image
chr7:55454226-55459659:-GBMMG.132EER1.4300e-07-0.4015image
ENSG00000154978.11,VOPP1GBMMG.132EAG1.6291e-07-0.3998image
ENSG00000154978.11,VOPP1HNSCAUY922EAG1.2774e-06-0.2348image
chr7:55454226-55459659:-HNSCAUY922EER1.2848e-06-0.2348image
chr7:55454226-55459659:-KICHBortezomibEER4.9627e-030.3524image
ENSG00000154978.11,VOPP1KICHBortezomibEAG4.9554e-030.3525image
ENSG00000154978.11,VOPP1KIRCATRAEAG1.1343e-190.4427image
chr7:55454226-55459659:-KIRCATRAEER8.2144e-200.4443image
chr7:55454226-55459659:-KIRPGW.441756EER3.4946e-07-0.3046image
ENSG00000154978.11,VOPP1KIRPGW.441756EAG3.4668e-07-0.3047image
ENSG00000154978.11,VOPP1LAMLAZD6482EAG7.2303e-050.4124image
chr7:55454226-55459659:-LAMLAZD6482EER2.8687e-050.4325image
ENSG00000154978.11,VOPP1LGGCyclopamineEAG7.2438e-060.1957image
chr7:55454226-55459659:-LGGCyclopamineEER7.5861e-060.1953image
ENSG00000154978.11,VOPP1LIHCEtoposideEAG6.8828e-040.2049image
chr7:55454226-55459659:-LIHCEtoposideEER6.6464e-040.2059image
chr7:55454226-55459659:-LUADLenalidomideEER3.5785e-180.3866image
ENSG00000154978.11,VOPP1LUADLenalidomideEAG3.4741e-180.3868image
ENSG00000154978.11,VOPP1LUSCCCT007093EAG2.3902e-140.3397image
chr7:55454226-55459659:-LUSCCCT007093EER2.4104e-140.3396image
chr7:55454226-55459659:-MESOBosutinibEER2.9424e-040.4016image
ENSG00000154978.11,VOPP1MESOBosutinibEAG2.9496e-040.4016image
chr7:55461448-55461737:-OVGW843682XEER7.0801e-03-0.4892image
ENSG00000154978.11,VOPP1OVBMS.536924EAG1.6999e-11-0.3906image
chr7:55454226-55459659:-OVBMS.536924EER1.5729e-11-0.3912image
ENSG00000154978.11,VOPP1PAADFH535EAG3.5263e-09-0.4335image
chr7:55454226-55459659:-PAADFH535EER3.5631e-09-0.4334image
ENSG00000154978.11,VOPP1PCPGAUY922EAG1.2744e-02-0.1978image
chr7:55454226-55459659:-PCPGAUY922EER1.2684e-02-0.1979image
chr7:55454226-55459659:-PRADBicalutamideEER4.4119e-09-0.2850image
ENSG00000154978.11,VOPP1PRADBicalutamideEAG4.5189e-09-0.2848image
ENSG00000154978.11,VOPP1READCCT007093EAG9.1887e-040.3381image
chr7:55454226-55459659:-READCCT007093EER9.1500e-040.3382image
ENSG00000154978.11,VOPP1SARCMetforminEAG1.9929e-040.2389image
chr7:55454226-55459659:-SARCMetforminEER1.9965e-040.2389image
chr7:55454226-55459659:-SKCMAZD.2281EER6.2150e-100.4177image
ENSG00000154978.11,VOPP1SKCMAZD.2281EAG6.2211e-100.4177image
chr7:55454226-55459659:-STADCCT007093EER7.2443e-160.4023image
ENSG00000154978.11,VOPP1STADCCT007093EAG6.9354e-160.4026image
ENSG00000154978.11,VOPP1TGCTErlotinibEAG1.9699e-04-0.3405image
chr7:55454226-55459659:-TGCTErlotinibEER1.9699e-04-0.3405image
ENSG00000154978.11,VOPP1THCABicalutamideEAG1.9834e-11-0.3136image
chr7:55454226-55459659:-THCABicalutamideEER1.9140e-11-0.3138image
ENSG00000154978.11,VOPP1THYMBAY.61.3606EAG8.7596e-060.4451image
chr7:55454226-55459659:-THYMBAY.61.3606EER8.7596e-060.4451image
ENSG00000154978.11,VOPP1UCECDMOGEAG3.7941e-100.4682image
chr7:55454226-55459659:-UCECDMOGEER3.7033e-100.4684image
chr7:55454226-55459659:-UCSBosutinibEER1.8256e-030.4260image
ENSG00000154978.11,VOPP1UCSBosutinibEAG1.8256e-030.4260image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType