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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: ZNF70 (ImmuneEditome ID:7621)

1. Gene summary of enriched editing regions for ZNF70

check button Gene summary
Gene informationGene symbol

ZNF70

Gene ID

7621

GeneSynonymsCos17
GeneCytomap

22q11.23

GeneTypeprotein-coding
GeneDescriptionzinc finger protein 70|zinc finger protein N27C7-1
GeneModificationdate20230518
UniprotIDQ9UC06
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr22:23739243-23740625:-ENST00000341976.4ENSG00000187792.4ZNF70UTR3AluSg,AluY,AluYm1chr22:23739243-23740625:-.alignment
chr22:23745646-23746358:-ENST00000341976.4ENSG00000187792.4ZNF70intronicAluSx1,(AAC)nchr22:23745646-23746358:-.alignment


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2. Tumor-specific enriched editing regions for ZNF70


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot
chr22:23739243-23740625:-THCAEER3.7837e-03image
ENSG00000187792.4,ZNF70THCAEAG5.4387e-03image


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot
ENSG00000187792.4,ZNF70LUADPathEAG2.1332e-027.7704e-030.1926image
chr22:23739243-23740625:-LUADPathEER3.5484e-021.2405e-020.1820image


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
chr22:23739243-23740625:-KIRPEER1.5660e-021.1685e-022.7602e+01image
ENSG00000187792.4,ZNF70KIRPEAG1.5660e-021.1685e-022.7602e+01image

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3. Enriched editing regions and immune related genes for ZNF70


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

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4. Enriched editing regions and immune related splicing for ZNF70


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr22:23739243-23740625:-
UVMEERIRENSG00000150991.10chr12124911603:124912506:124912962:1249129840.38883.6235e-024.5353e-040.4321imageNNNAMast_cells_resting
chr22:23739243-23740625:-
UVMEERMEXENSG00000150991.10chr12124912180:124912278:124912408:124912734:124912962:124913000:124913418:1249134950.36114.8010e-022.4750e-040.4564imageNNNAT_cells_CD8GSVA_HALLMARK_IL6_JAK_STAT3_SIGNALING
chr22:23739243-23740625:-
UVMEERA3ENSG00000150991.10chr12124913418:124913428:124912180:124912506:124912180:124912734-0.36864.6540e-025.4064e-04-0.4369imageNNNAMast_cells_restingGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSE

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5. Enriched editing regions and immune infiltration for ZNF70


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr22:23739243-23740625:-BLCAEERNK_cells_activated5.0256e-030.2384image
ENSG00000187792.4,ZNF70BLCAEAGNK_cells_activated4.4688e-030.2398image
chr22:23739243-23740625:-BRCAEERT_cells_regulatory_(Tregs)3.0396e-030.1385image
ENSG00000187792.4,ZNF70BRCAEAGNK_cells_activated2.5819e-030.1386image
chr22:23739243-23740625:-CESCEERMonocytes3.9803e-040.4037image
ENSG00000187792.4,ZNF70CESCEAGMonocytes3.9381e-040.4040image
chr22:23739243-23740625:-COADEEREosinophils4.6728e-020.4283image
ENSG00000187792.4,ZNF70COADEAGEosinophils4.6728e-020.4283image
chr22:23739243-23740625:-ESCAEERB_cells_naive4.4383e-020.3760image
chr22:23739243-23740625:-GBMEERDendritic_cells_activated3.0681e-030.3539image
ENSG00000187792.4,ZNF70GBMEAGDendritic_cells_activated3.0724e-030.3539image
chr22:23739243-23740625:-HNSCEERT_cells_CD82.9746e-020.2698image
ENSG00000187792.4,ZNF70HNSCEAGT_cells_CD83.7159e-020.2552image
chr22:23739243-23740625:-KIRCEERNeutrophils4.2428e-020.1470image
chr22:23739243-23740625:-KIRPEERMacrophages_M21.4580e-02-0.2234image
ENSG00000187792.4,ZNF70KIRPEAGMacrophages_M21.5520e-02-0.2214image
ENSG00000187792.4,ZNF70LAMLEAGMast_cells_resting2.7284e-020.4411image
ENSG00000187792.4,ZNF70LGGEAGT_cells_CD4_memory_activated4.9425e-020.1206image
chr22:23739243-23740625:-LUADEERB_cells_naive3.0020e-02-0.1575image
ENSG00000187792.4,ZNF70LUADEAGB_cells_naive4.1606e-02-0.1472image
chr22:23739243-23740625:-LUSCEERNK_cells_activated4.1980e-03-0.2021image
ENSG00000187792.4,ZNF70LUSCEAGNK_cells_activated6.0158e-03-0.1917image
chr22:23739243-23740625:-OVEERB_cells_memory3.7042e-030.2455image
ENSG00000187792.4,ZNF70OVEAGB_cells_memory8.4320e-040.2771image
chr22:23739243-23740625:-PAADEERT_cells_regulatory_(Tregs)3.0428e-020.4334image
ENSG00000187792.4,ZNF70PAADEAGT_cells_regulatory_(Tregs)2.8028e-020.4308image
chr22:23739243-23740625:-PCPGEERNeutrophils4.4356e-020.2174image
ENSG00000187792.4,ZNF70PCPGEAGNeutrophils4.1395e-020.2192image
chr22:23739243-23740625:-PRADEERMacrophages_M03.6283e-03-0.2053image
ENSG00000187792.4,ZNF70PRADEAGMacrophages_M06.5028e-03-0.1909image
chr22:23739243-23740625:-SARCEERNK_cells_resting3.2023e-020.1617image
ENSG00000187792.4,ZNF70SARCEAGNK_cells_resting2.9157e-020.1631image
chr22:23739243-23740625:-STADEERMacrophages_M12.2158e-020.2409image
chr22:23739243-23740625:-TGCTEERT_cells_gamma_delta1.5874e-020.3500image
ENSG00000187792.4,ZNF70TGCTEAGT_cells_gamma_delta1.5362e-020.3516image
chr22:23739243-23740625:-THCAEERDendritic_cells_activated1.9487e-030.1747image
ENSG00000187792.4,ZNF70THCAEAGDendritic_cells_activated3.4981e-030.1641image
chr22:23739243-23740625:-UCECEERT_cells_CD82.5033e-020.2505image
ENSG00000187792.4,ZNF70UCECEAGT_cells_CD82.3319e-020.2534image
chr22:23739243-23740625:-UVMEERT_cells_regulatory_(Tregs)2.2924e-02-0.2886image
ENSG00000187792.4,ZNF70UVMEAGT_cells_regulatory_(Tregs)2.2924e-02-0.2886image


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6. Enriched editing regions and immune gene sets for ZNF70


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000187792.4,ZNF70BRCAGSVA_HALLMARK_PROTEIN_SECRETIONEAG1.6705e-05-0.1969image
chr22:23739243-23740625:-BRCAGSVA_HALLMARK_PROTEIN_SECRETIONEER1.9208e-04-0.1738image
ENSG00000187792.4,ZNF70ESCAGSVA_HALLMARK_ANGIOGENESISEAG3.0472e-02-0.2921image
ENSG00000187792.4,ZNF70GBMGSVA_HALLMARK_HEME_METABOLISMEAG1.6888e-020.2889image
chr22:23739243-23740625:-GBMGSVA_HALLMARK_HEME_METABOLISMEER1.7073e-020.2884image
chr22:23739243-23740625:-HNSCGSVA_HALLMARK_IL6_JAK_STAT3_SIGNALINGEER6.3341e-030.3353image
ENSG00000187792.4,ZNF70HNSCGSVA_HALLMARK_ALLOGRAFT_REJECTIONEAG9.2913e-030.3156image
ENSG00000187792.4,ZNF70KICHGSVA_HALLMARK_MYOGENESISEAG1.4629e-02-0.5130image
chr22:23739243-23740625:-KICHGSVA_HALLMARK_MYOGENESISEER1.4129e-02-0.5152image
chr22:23739243-23740625:-KIRCGSVA_HALLMARK_GLYCOLYSISEER2.2232e-030.2200image
ENSG00000187792.4,ZNF70KIRCGSVA_HALLMARK_GLYCOLYSISEAG5.0801e-030.2009image
ENSG00000187792.4,ZNF70LAMLGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG3.7355e-030.5582image
ENSG00000187792.4,ZNF70LGGGSVA_HALLMARK_MYC_TARGETS_V2EAG1.3417e-02-0.1514image
chr22:23739243-23740625:-LUADGSVA_HALLMARK_IL2_STAT5_SIGNALINGEER1.9749e-020.1690image
ENSG00000187792.4,ZNF70LUADGSVA_HALLMARK_IL2_STAT5_SIGNALINGEAG3.0559e-020.1562image
chr22:23739243-23740625:-OVGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER4.4926e-04-0.2947image
ENSG00000187792.4,ZNF70OVGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG3.4983e-04-0.2959image
chr22:23739243-23740625:-PAADGSVA_HALLMARK_CHOLESTEROL_HOMEOSTASISEER1.3606e-020.4868image
ENSG00000187792.4,ZNF70PAADGSVA_HALLMARK_CHOLESTEROL_HOMEOSTASISEAG1.3715e-020.4771image
ENSG00000187792.4,ZNF70PCPGGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG1.8193e-020.2527image
chr22:23739243-23740625:-PCPGGSVA_HALLMARK_PANCREAS_BETA_CELLSEER1.2401e-020.2686image
ENSG00000187792.4,ZNF70PRADGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEAG8.9263e-030.1836image
chr22:23739243-23740625:-PRADGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEER9.6415e-030.1831image
chr22:23739243-23740625:-SARCGSVA_HALLMARK_HEDGEHOG_SIGNALINGEER2.2483e-03-0.2289image
ENSG00000187792.4,ZNF70SARCGSVA_HALLMARK_HEDGEHOG_SIGNALINGEAG1.9376e-03-0.2302image
ENSG00000187792.4,ZNF70SKCMGSVA_HALLMARK_PI3K_AKT_MTOR_SIGNALINGEAG5.6931e-040.1919image
chr22:23739243-23740625:-SKCMGSVA_HALLMARK_PI3K_AKT_MTOR_SIGNALINGEER3.5356e-050.2304image
ENSG00000187792.4,ZNF70STADGSVA_HALLMARK_MITOTIC_SPINDLEEAG2.3093e-03-0.2583image
chr22:23739243-23740625:-TGCTGSVA_HALLMARK_MYC_TARGETS_V2EER8.7642e-040.4693image
ENSG00000187792.4,ZNF70TGCTGSVA_HALLMARK_MYC_TARGETS_V2EAG1.9411e-030.4406image
ENSG00000187792.4,ZNF70THCAGSVA_HALLMARK_COAGULATIONEAG4.5858e-040.1963image
chr22:23739243-23740625:-THCAGSVA_HALLMARK_COAGULATIONEER3.2644e-040.2021image
ENSG00000187792.4,ZNF70THYMGSVA_HALLMARK_XENOBIOTIC_METABOLISMEAG4.8402e-02-0.2287image
ENSG00000187792.4,ZNF70UCECGSVA_HALLMARK_G2M_CHECKPOINTEAG4.2173e-02-0.2278image
chr22:23739243-23740625:-UCECGSVA_HALLMARK_ANDROGEN_RESPONSEEER3.9269e-02-0.2310image
chr22:23739243-23740625:-UVMGSVA_HALLMARK_IL6_JAK_STAT3_SIGNALINGEER3.0920e-02-0.2744image
ENSG00000187792.4,ZNF70UVMGSVA_HALLMARK_IL6_JAK_STAT3_SIGNALINGEAG3.0920e-02-0.2744image


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7. Enriched editing regions and drugs for ZNF70


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000187792.4,ZNF70BLCAAZD6244EAG1.0755e-02-0.2157image
chr22:23739243-23740625:-BLCAAZD6244EER1.2971e-02-0.2118image
ENSG00000187792.4,ZNF70BRCABryostatin.1EAG2.2822e-04-0.1691image
chr22:23739243-23740625:-BRCABMS.708163EER5.2289e-040.1618image
chr22:23739243-23740625:-CESCElesclomolEER2.1544e-02-0.2687image
ENSG00000187792.4,ZNF70CESCElesclomolEAG2.1878e-02-0.2680image
ENSG00000187792.4,ZNF70COADLenalidomideEAG4.6747e-02-0.4283image
chr22:23739243-23740625:-COADLenalidomideEER4.6747e-02-0.4283image
chr22:23739243-23740625:-GBMJNK.Inhibitor.VIIIEER4.6367e-020.2424image
ENSG00000187792.4,ZNF70GBMJNK.Inhibitor.VIIIEAG4.1072e-020.2484image
chr22:23739243-23740625:-HNSCLenalidomideEER5.5624e-03-0.3402image
ENSG00000187792.4,ZNF70HNSCLenalidomideEAG6.7627e-03-0.3278image
chr22:23739243-23740625:-KICHMG.132EER4.0391e-020.4401image
ENSG00000187792.4,ZNF70KICHMG.132EAG3.8411e-020.4441image
chr22:23739243-23740625:-KIRCEmbelinEER8.4017e-030.1902image
ENSG00000187792.4,ZNF70KIRCEmbelinEAG6.2177e-030.1963image
ENSG00000187792.4,ZNF70KIRPLFM.A13EAG5.3785e-050.3614image
chr22:23739243-23740625:-KIRPLFM.A13EER6.9738e-050.3563image
ENSG00000187792.4,ZNF70LAMLAS601245EAG5.7323e-030.5362image
ENSG00000187792.4,ZNF70LGGGSK.650394EAG5.5695e-030.1695image
chr22:23739243-23740625:-LUADCyclopamineEER1.8088e-02-0.1714image
ENSG00000187792.4,ZNF70LUADAZD7762EAG1.3270e-02-0.1784image
chr22:23739243-23740625:-LUSCElesclomolEER5.4719e-030.1962image
ENSG00000187792.4,ZNF70LUSCCisplatinEAG4.3285e-030.1990image
chr22:23739243-23740625:-OVBMS.708163EER4.3127e-03-0.2416image
ENSG00000187792.4,ZNF70OVBMS.708163EAG2.5381e-03-0.2515image
chr22:23739243-23740625:-PAADAxitinibEER1.3531e-020.4871image
ENSG00000187792.4,ZNF70PAADAxitinibEAG1.3291e-020.4790image
ENSG00000187792.4,ZNF70PCPGAxitinibEAG3.4724e-020.2267image
chr22:23739243-23740625:-PCPGAxitinibEER3.9305e-020.2227image
chr22:23739243-23740625:-PRADBortezomibEER6.4604e-04-0.2398image
ENSG00000187792.4,ZNF70PRADBortezomibEAG2.9602e-04-0.2521image
chr22:23739243-23740625:-SARCMG.132EER6.9096e-03-0.2029image
ENSG00000187792.4,ZNF70SARCMG.132EAG2.5497e-03-0.2242image
chr22:23739243-23740625:-SKCMATRAEER5.2347e-03-0.1567image
ENSG00000187792.4,ZNF70SKCMATRAEAG3.3388e-02-0.1191image
ENSG00000187792.4,ZNF70STADBIBW2992EAG1.0417e-02-0.2182image
chr22:23739243-23740625:-TGCTLFM.A13EER1.7371e-030.4447image
ENSG00000187792.4,ZNF70TGCTLFM.A13EAG2.3631e-030.4330image
ENSG00000187792.4,ZNF70THCAAZD.0530EAG2.2368e-03-0.1716image
chr22:23739243-23740625:-THCAAZD.0530EER1.9562e-03-0.1747image
chr22:23739243-23740625:-THYMATRAEER1.4719e-02-0.2807image
ENSG00000187792.4,ZNF70THYMABT.888EAG9.1795e-03-0.2989image
ENSG00000187792.4,ZNF70UCECGDC.0449EAG1.6931e-05-0.4609image
chr22:23739243-23740625:-UCECGDC.0449EER1.4112e-05-0.4647image
chr22:23739243-23740625:-UCSAUY922EER3.0334e-02-0.3066image
ENSG00000187792.4,ZNF70UCSAUY922EAG4.3319e-02-0.2870image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType