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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: MOCOS (ImmuneEditome ID:55034)

1. Gene summary of enriched editing regions for MOCOS

check button Gene summary
Gene informationGene symbol

MOCOS

Gene ID

55034

GeneSynonymsHMCS|MCS|MOS
GeneCytomap

18q12.2

GeneTypeprotein-coding
GeneDescriptionmolybdenum cofactor sulfurase
GeneModificationdate20230329
UniprotIDQ96EN8
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr18:36190445-36193105:+ENST00000261326.5ENSG00000075643.5MOCOSintronicAluJr,AluYb8,AluJb,AluSz6,AluSx,L1ME4b,(CA)n,L1M4,L2a,MSTAchr18:36190445-36193105:+.alignment
chr18:36210547-36210780:+ENST00000261326.5ENSG00000075643.5MOCOSintronicAluSxchr18:36210547-36210780:+.alignment
chr18:36270410-36271138:+ENST00000261326.5ENSG00000075643.5MOCOSUTR3AluJo,AluSc8chr18:36270410-36271138:+.alignment


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2. Tumor-specific enriched editing regions for MOCOS


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot
chr18:36270410-36271138:+BLCAPathEER4.2556e-024.5393e-030.1830image
ENSG00000075643.5,MOCOSBLCAPathEAG4.6445e-026.4991e-030.1734image
chr18:36270410-36271138:+ESCAPathEER4.6746e-035.0584e-040.3735image
ENSG00000075643.5,MOCOSLUADPathEAG4.0712e-021.2787e-020.1873image
chr18:36270410-36271138:+LUADPathEER3.4457e-021.0472e-020.1931image
chr18:36270410-36271138:+UCECCliEER1.0135e-032.6539e-030.3050image
ENSG00000075643.5,MOCOSUCECCliEAG4.4512e-041.0495e-030.3154image


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
chr18:36270410-36271138:+ESCAEER2.0701e-034.4942e-031.9171e+01image
ENSG00000075643.5,MOCOSSTADEAG3.1402e-032.7271e-046.2132e+01image

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3. Enriched editing regions and immune related genes for MOCOS


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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4. Enriched editing regions and immune related splicing for MOCOS


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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5. Enriched editing regions and immune infiltration for MOCOS


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr18:36270410-36271138:+ACCEERMacrophages_M11.2627e-020.3202image
ENSG00000075643.5,MOCOSACCEAGMacrophages_M19.6002e-030.3291image
chr18:36270410-36271138:+BLCAEERMacrophages_M01.1780e-020.1627image
ENSG00000075643.5,MOCOSBLCAEAGMacrophages_M05.0574e-030.1786image
chr18:36270410-36271138:+BRCAEERNeutrophils9.2867e-030.1198image
ENSG00000075643.5,MOCOSBRCAEAGNeutrophils6.3716e-030.1250image
chr18:36270410-36271138:+CESCEERPlasma_cells2.3144e-03-0.2111image
ENSG00000075643.5,MOCOSCESCEAGPlasma_cells1.2847e-03-0.2223image
chr18:36270410-36271138:+CHOLEERPlasma_cells3.7934e-020.4556image
ENSG00000075643.5,MOCOSCHOLEAGPlasma_cells3.7934e-020.4556image
ENSG00000075643.5,MOCOSCOADEAGT_cells_CD4_memory_resting2.6450e-020.2422image
chr18:36190445-36193105:+ESCAEERMacrophages_M03.2672e-020.2020image
chr18:36270410-36271138:+ESCAEERMacrophages_M19.5404e-030.2661image
chr18:36270410-36271138:+HNSCEERT_cells_CD4_memory_resting1.2879e-020.1783image
ENSG00000075643.5,MOCOSHNSCEAGT_cells_CD4_memory_resting1.4240e-020.1753image
chr18:36270410-36271138:+KIRCEERPlasma_cells3.3278e-020.2644image
ENSG00000075643.5,MOCOSKIRCEAGPlasma_cells2.4342e-030.3644image
chr18:36270410-36271138:+KIRPEERMacrophages_M02.3594e-020.2872image
ENSG00000075643.5,MOCOSKIRPEAGMacrophages_M02.7708e-020.2753image
chr18:36270410-36271138:+LIHCEERMast_cells_activated1.6764e-050.2773image
ENSG00000075643.5,MOCOSLIHCEAGMast_cells_activated1.5698e-050.2765image
chr18:36270410-36271138:+LUADEERMast_cells_activated6.7799e-030.2034image
ENSG00000075643.5,MOCOSLUADEAGMast_cells_activated6.6245e-030.2034image
chr18:36270410-36271138:+LUSCEERMacrophages_M21.9066e-020.2016image
ENSG00000075643.5,MOCOSLUSCEAGMacrophages_M22.1716e-020.1974image
chr18:36190445-36193105:+OVEERMast_cells_resting2.9179e-02-0.2970image
chr18:36270410-36271138:+OVEERT_cells_CD4_memory_resting1.8137e-020.2281image
ENSG00000075643.5,MOCOSOVEAGT_cells_CD4_memory_resting5.4056e-030.2525image
chr18:36270410-36271138:+PAADEERMacrophages_M01.1378e-02-0.4417image
ENSG00000075643.5,MOCOSPAADEAGMacrophages_M01.1378e-02-0.4417image
chr18:36270410-36271138:+SARCEERT_cells_gamma_delta4.4626e-020.2943image
ENSG00000075643.5,MOCOSSARCEAGT_cells_gamma_delta4.4626e-020.2943image
chr18:36190445-36193105:+SKCMEERMonocytes6.2208e-030.4959image
chr18:36270410-36271138:+SKCMEERT_cells_CD86.7756e-030.1842image
ENSG00000075643.5,MOCOSSKCMEAGT_cells_CD81.8954e-020.1585image
chr18:36190445-36193105:+STADEERMacrophages_M02.7272e-02-0.1550image
chr18:36270410-36271138:+STADEERMacrophages_M12.1149e-020.1663image
ENSG00000075643.5,MOCOSSTADEAGMacrophages_M11.7601e-020.1444image
ENSG00000075643.5,MOCOSTHCAEAGT_cells_gamma_delta1.7506e-02-0.5011image


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6. Enriched editing regions and immune gene sets for MOCOS


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000075643.5,MOCOSACCGSVA_HALLMARK_APOPTOSISEAG3.7163e-030.3661image
chr18:36270410-36271138:+ACCGSVA_HALLMARK_APOPTOSISEER4.7175e-030.3600image
ENSG00000075643.5,MOCOSBLCAGSVA_HALLMARK_HEDGEHOG_SIGNALINGEAG7.1491e-070.3104image
chr18:36270410-36271138:+BLCAGSVA_HALLMARK_HEDGEHOG_SIGNALINGEER4.3415e-070.3199image
chr18:36190445-36193105:+BRCAGSVA_HALLMARK_G2M_CHECKPOINTEER3.2076e-02-0.3580image
ENSG00000075643.5,MOCOSBRCAGSVA_HALLMARK_ANDROGEN_RESPONSEEAG2.5254e-040.1672image
chr18:36270410-36271138:+BRCAGSVA_HALLMARK_ANDROGEN_RESPONSEEER6.2447e-040.1571image
ENSG00000075643.5,MOCOSCESCGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG2.7709e-03-0.2070image
chr18:36270410-36271138:+CESCGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER1.4929e-03-0.2199image
ENSG00000075643.5,MOCOSCOADGSVA_HALLMARK_DNA_REPAIREAG2.5444e-03-0.3252image
chr18:36270410-36271138:+COADGSVA_HALLMARK_PROTEIN_SECRETIONEER4.8149e-030.3084image
chr18:36270410-36271138:+ESCAGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEER2.3807e-030.3098image
chr18:36190445-36193105:+ESCAGSVA_HALLMARK_HYPOXIAEER1.4439e-020.2306image
ENSG00000075643.5,MOCOSESCAGSVA_HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITIONEAG2.9056e-020.1930image
chr18:36270410-36271138:+HNSCGSVA_HALLMARK_APICAL_JUNCTIONEER1.7184e-040.2666image
ENSG00000075643.5,MOCOSHNSCGSVA_HALLMARK_APICAL_JUNCTIONEAG1.4273e-040.2691image
chr18:36270410-36271138:+LIHCGSVA_HALLMARK_COAGULATIONEER1.6656e-020.1564image
ENSG00000075643.5,MOCOSLIHCGSVA_HALLMARK_COAGULATIONEAG1.4226e-020.1591image
ENSG00000075643.5,MOCOSLUADGSVA_HALLMARK_GLYCOLYSISEAG2.4608e-020.1689image
chr18:36270410-36271138:+LUADGSVA_HALLMARK_GLYCOLYSISEER1.3259e-020.1864image
chr18:36270410-36271138:+LUSCGSVA_HALLMARK_PANCREAS_BETA_CELLSEER4.6136e-040.2973image
ENSG00000075643.5,MOCOSLUSCGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG2.7426e-040.3084image
ENSG00000075643.5,MOCOSOVGSVA_HALLMARK_ADIPOGENESISEAG1.6897e-020.2177image
chr18:36190445-36193105:+OVGSVA_HALLMARK_IL6_JAK_STAT3_SIGNALINGEER1.1462e-02-0.3416image
chr18:36270410-36271138:+PAADGSVA_HALLMARK_MYC_TARGETS_V2EER1.5440e-02-0.4246image
ENSG00000075643.5,MOCOSPAADGSVA_HALLMARK_MYC_TARGETS_V2EAG1.5440e-02-0.4246image
ENSG00000075643.5,MOCOSSARCGSVA_HALLMARK_XENOBIOTIC_METABOLISMEAG1.9206e-030.4410image
chr18:36270410-36271138:+SARCGSVA_HALLMARK_XENOBIOTIC_METABOLISMEER1.9206e-030.4410image
ENSG00000075643.5,MOCOSSKCMGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEAG6.9709e-050.2654image
chr18:36190445-36193105:+SKCMGSVA_HALLMARK_IL2_STAT5_SIGNALINGEER1.5799e-02-0.4441image
chr18:36270410-36271138:+SKCMGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER7.0299e-060.3010image
chr18:36270410-36271138:+STADGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEER4.4968e-020.1449image
ENSG00000075643.5,MOCOSSTADGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEAG9.9562e-040.1992image
chr18:36190445-36193105:+STADGSVA_HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITIONEER7.3226e-030.1877image
ENSG00000075643.5,MOCOSUCECGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG3.4291e-020.3355image
chr18:36270410-36271138:+UCECGSVA_HALLMARK_KRAS_SIGNALING_DNEER1.5823e-020.4049image


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7. Enriched editing regions and drugs for MOCOS


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
chr18:36270410-36271138:+ACCCI.1040EER5.0717e-03-0.3573image
ENSG00000075643.5,MOCOSACCCI.1040EAG4.2625e-03-0.3610image
ENSG00000075643.5,MOCOSBLCACGP.60474EAG2.0796e-04-0.2348image
chr18:36270410-36271138:+BLCACGP.60474EER7.4775e-05-0.2533image
ENSG00000075643.5,MOCOSBRCAAZD.0530EAG6.7423e-03-0.1244image
chr18:36270410-36271138:+BRCAAZD.0530EER5.1533e-03-0.1290image
chr18:36190445-36193105:+BRCACGP.60474EER1.0392e-020.4218image
ENSG00000075643.5,MOCOSCESCGDC0941EAG1.2706e-030.2225image
chr18:36270410-36271138:+CESCGDC0941EER6.5318e-040.2356image
ENSG00000075643.5,MOCOSCHOLBI.D1870EAG7.0235e-03-0.5697image
chr18:36270410-36271138:+CHOLBI.D1870EER7.0235e-03-0.5697image
ENSG00000075643.5,MOCOSCOADGW843682XEAG2.3685e-050.4437image
chr18:36270410-36271138:+COADBIRB.0796EER2.6478e-020.2451image
ENSG00000075643.5,MOCOSESCACGP.60474EAG7.1120e-03-0.2368image
chr18:36270410-36271138:+ESCAJNK.Inhibitor.VIIIEER3.5855e-03-0.2976image
chr18:36190445-36193105:+ESCAAZD8055EER2.5358e-02-0.2113image
ENSG00000075643.5,MOCOSHNSCMetforminEAG5.9456e-030.1963image
chr18:36270410-36271138:+HNSCMetforminEER7.2887e-030.1921image
chr18:36270410-36271138:+KIRCMG.132EER9.8004e-030.3182image
ENSG00000075643.5,MOCOSKIRCMidostaurinEAG2.6676e-020.2708image
ENSG00000075643.5,MOCOSKIRPErlotinibEAG4.3490e-020.2532image
chr18:36270410-36271138:+KIRPErlotinibEER1.1656e-020.3184image
chr18:36270410-36271138:+LIHCMethotrexateEER6.2650e-04-0.2283image
ENSG00000075643.5,MOCOSLIHCMethotrexateEAG4.3373e-04-0.2332image
chr18:36270410-36271138:+LUSCMG.132EER4.2806e-04-0.2990image
ENSG00000075643.5,MOCOSLUSCMG.132EAG2.8871e-04-0.3073image
chr18:36190445-36193105:+OVA.770041EER5.4378e-04-0.4552image
chr18:36270410-36271138:+OVJNK.9LEER6.3785e-030.2621image
ENSG00000075643.5,MOCOSOVGNF.2EAG1.7191e-03-0.2833image
chr18:36270410-36271138:+PAADAZD6482EER1.8636e-02-0.4136image
ENSG00000075643.5,MOCOSPAADAZD6482EAG1.8636e-02-0.4136image
ENSG00000075643.5,MOCOSPRADBAY.61.3606EAG3.1378e-020.3697image
ENSG00000075643.5,MOCOSREADBX.795EAG2.1393e-030.5848image
chr18:36270410-36271138:+SARCCMKEER1.1925e-030.4584image
ENSG00000075643.5,MOCOSSARCCMKEAG1.1925e-030.4584image
ENSG00000075643.5,MOCOSSKCMJNK.Inhibitor.VIIIEAG2.2706e-02-0.1539image
chr18:36270410-36271138:+SKCMJNK.Inhibitor.VIIIEER1.1626e-02-0.1718image
chr18:36270410-36271138:+STADBMS.536924EER4.0281e-02-0.1482image
ENSG00000075643.5,MOCOSSTADCI.1040EAG1.5466e-02-0.1472image
chr18:36190445-36193105:+STADFTI.277EER3.1830e-03-0.2061image
ENSG00000075643.5,MOCOSTHCABicalutamideEAG3.6326e-02-0.4484image
ENSG00000075643.5,MOCOSUCECBortezomibEAG1.3318e-02-0.3882image
chr18:36270410-36271138:+UCECBortezomibEER6.5329e-03-0.4511image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType
chr18:36190445-36193105:+ENST00000261326.5Q96EN8DB00114Pyridoxal phosphateSmallMoleculeDrug
chr18:36210547-36210780:+ENST00000261326.5Q96EN8DB00114Pyridoxal phosphateSmallMoleculeDrug
chr18:36270410-36271138:+ENST00000261326.5Q96EN8DB00114Pyridoxal phosphateSmallMoleculeDrug