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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: ST7L (ImmuneEditome ID:54879)

1. Gene summary of enriched editing regions for ST7L

check button Gene summary
Gene informationGene symbol

ST7L

Gene ID

54879

GeneSynonymsFAM4B|ST7R|STLR
GeneCytomap

1p13.2

GeneTypeprotein-coding
GeneDescriptionsuppressor of tumorigenicity 7 protein-like|ST7-related protein|tumor suppressor ST7 like
GeneModificationdate20230329
UniprotIDQ8TDW4;Q5TEH7
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr1:112547241-112548325:-ENST00000463235.4ENSG00000007341.17ST7LncRNA_intronicAluSq2,AluSx,AluSz6,L2cchr1:112547241-112548325:-.alignment
chr1:112547241-112548325:-ENST00000480988.4ENSG00000007341.17ST7LncRNA_intronicAluSq2,AluSx,AluSz6,L2cchr1:112547241-112548325:-.alignment
chr1:112547241-112548325:-ENST00000495109.2ENSG00000007341.17ST7LncRNA_intronicAluSq2,AluSx,AluSz6,L2cchr1:112547241-112548325:-.alignment
chr1:112547241-112548325:-ENST00000497457.4ENSG00000007341.17ST7LncRNA_intronicAluSq2,AluSx,AluSz6,L2cchr1:112547241-112548325:-.alignment
chr1:112564588-112566985:-ENST00000463235.4ENSG00000007341.17ST7LncRNA_intronicL1ME2,MIRb,AluSx3,(T)n,AluJb,AluSq2chr1:112564588-112566985:-.alignment
chr1:112564588-112566985:-ENST00000480988.4ENSG00000007341.17ST7LncRNA_intronicL1ME2,MIRb,AluSx3,(T)n,AluJb,AluSq2chr1:112564588-112566985:-.alignment
chr1:112564588-112566985:-ENST00000497457.4ENSG00000007341.17ST7LncRNA_intronicL1ME2,MIRb,AluSx3,(T)n,AluJb,AluSq2chr1:112564588-112566985:-.alignment
chr1:112573762-112575213:-ENST00000463235.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluSx3,AluSx,AluY,L1ME3B,AluSc8,A-richchr1:112573762-112575213:-.alignment
chr1:112573762-112575213:-ENST00000480988.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluSx3,AluSx,AluY,L1ME3B,AluSc8,A-richchr1:112573762-112575213:-.alignment
chr1:112573762-112575213:-ENST00000497457.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluSx3,AluSx,AluY,L1ME3B,AluSc8,A-richchr1:112573762-112575213:-.alignment
chr1:112602778-112603039:-ENST00000459630.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112602778-112603039:-ENST00000463235.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112602778-112603039:-ENST00000466360.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112602778-112603039:-ENST00000470519.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112602778-112603039:-ENST00000479436.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112602778-112603039:-ENST00000480988.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112602778-112603039:-ENST00000497235.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112602778-112603039:-ENST00000497457.4ENSG00000007341.17ST7LncRNA_intronicCharlie1a,AluYchr1:112602778-112603039:-.alignment
chr1:112607442-112607592:-ENST00000473206.4ENSG00000007341.17ST7LncRNA_exonicAluSq2chr1:112607442-112607592:-.alignment
chr1:112607442-112607592:-ENST00000477332.4ENSG00000007341.17ST7LncRNA_exonicAluSq2chr1:112607442-112607592:-.alignment
chr1:112611637-112613081:-ENST00000459630.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000463235.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000467335.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000470519.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000470683.1ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000473206.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000477332.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000479436.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000480988.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000485753.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000492274.1ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000497235.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000497457.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment
chr1:112611637-112613081:-ENST00000498383.4ENSG00000007341.17ST7LncRNA_intronicAluJb,AluJrchr1:112611637-112613081:-.alignment


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2. Tumor-specific enriched editing regions for ST7L


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
chr1:112611637-112613081:-KIRCEER1.2586e-024.1326e-021.2468e+05image
ENSG00000007341.17,ST7LKIRCEAG2.8624e-022.0058e-021.9288e+02image
ENSG00000007341.17,ST7LLUADEAG1.4683e-021.0949e-023.8762e-04image

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3. Enriched editing regions and immune related genes for ST7L


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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4. Enriched editing regions and immune related splicing for ST7L


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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5. Enriched editing regions and immune infiltration for ST7L


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
ENSG00000007341.17,ST7LBLCAEAGNK_cells_resting1.3883e-020.5054image
ENSG00000007341.17,ST7LBRCAEAGEosinophils4.8489e-020.1930image
chr1:112564588-112566985:-ESCAEERB_cells_memory4.3283e-030.5315image
chr1:112607442-112607592:-ESCAEERT_cells_regulatory_(Tregs)1.3402e-020.3583image
chr1:112611637-112613081:-ESCAEERMast_cells_resting8.7936e-030.5445image
ENSG00000007341.17,ST7LKIRCEAGT_cells_CD4_memory_resting1.3149e-020.5089image
ENSG00000007341.17,ST7LLAMLEAGMast_cells_activated1.9509e-02-0.3086image
ENSG00000007341.17,ST7LLUADEAGNeutrophils7.3192e-030.3748image
ENSG00000007341.17,ST7LLUSCEAGT_cells_gamma_delta1.9069e-030.5064image
ENSG00000007341.17,ST7LOVEAGNeutrophils8.0023e-030.2612image
ENSG00000007341.17,ST7LPRADEAGMonocytes6.5479e-040.5552image
chr1:112547241-112548325:-STADEERT_cells_CD83.4235e-020.2971image


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6. Enriched editing regions and immune gene sets for ST7L


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000007341.17,ST7LBLCAGSVA_HALLMARK_HEDGEHOG_SIGNALINGEAG4.3577e-02-0.4244image
chr1:112611637-112613081:-BRCAGSVA_HALLMARK_ANGIOGENESISEER3.5842e-050.4856image
ENSG00000007341.17,ST7LBRCAGSVA_HALLMARK_APICAL_JUNCTIONEAG5.8601e-030.2672image
chr1:112611637-112613081:-ESCAGSVA_HALLMARK_HYPOXIAEER1.3162e-02-0.5198image
chr1:112607442-112607592:-ESCAGSVA_HALLMARK_PANCREAS_BETA_CELLSEER6.3747e-030.3924image
ENSG00000007341.17,ST7LESCAGSVA_HALLMARK_NOTCH_SIGNALINGEAG1.7592e-03-0.3530image
ENSG00000007341.17,ST7LKIRCGSVA_HALLMARK_P53_PATHWAYEAG2.0035e-02-0.4814image
ENSG00000007341.17,ST7LLAMLGSVA_HALLMARK_ALLOGRAFT_REJECTIONEAG2.7716e-020.2917image
ENSG00000007341.17,ST7LLUADGSVA_HALLMARK_MTORC1_SIGNALINGEAG1.7223e-020.3355image
ENSG00000007341.17,ST7LLUSCGSVA_HALLMARK_MITOTIC_SPINDLEEAG1.1148e-02-0.4240image
ENSG00000007341.17,ST7LOVGSVA_HALLMARK_MYC_TARGETS_V1EAG1.2502e-030.3152image
ENSG00000007341.17,ST7LPRADGSVA_HALLMARK_ESTROGEN_RESPONSE_EARLYEAG1.3596e-020.4192image
ENSG00000007341.17,ST7LSTADGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEAG2.4233e-03-0.2339image
chr1:112547241-112548325:-STADGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEER1.0672e-030.4450image
chr1:112564588-112566985:-STADGSVA_HALLMARK_COMPLEMENTEER7.2658e-030.3827image


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7. Enriched editing regions and drugs for ST7L


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000007341.17,ST7LBLCACytarabineEAG5.9821e-03-0.5550image
chr1:112611637-112613081:-BRCABryostatin.1EER3.6998e-04-0.4254image
ENSG00000007341.17,ST7LBRCAJNK.Inhibitor.VIIIEAG6.7713e-030.2628image
chr1:112611637-112613081:-ESCAIPA.3EER3.5215e-03-0.5945image
chr1:112607442-112607592:-ESCABicalutamideEER1.2659e-020.3610image
ENSG00000007341.17,ST7LESCAATRAEAG2.3885e-02-0.2590image
ENSG00000007341.17,ST7LKIRCGW843682XEAG1.7983e-020.4886image
ENSG00000007341.17,ST7LLAMLJNJ.26854165EAG3.2074e-020.2843image
ENSG00000007341.17,ST7LLUADDocetaxelEAG9.9144e-03-0.3614image
ENSG00000007341.17,ST7LLUSCJNK.Inhibitor.VIIIEAG3.1574e-040.5736image
ENSG00000007341.17,ST7LOVAZD6482EAG3.8352e-060.4414image
ENSG00000007341.17,ST7LPRADJNK.Inhibitor.VIIIEAG1.4694e-020.4149image
ENSG00000007341.17,ST7LSKCMLenalidomideEAG1.6592e-02-0.5047image
ENSG00000007341.17,ST7LSTADDMOGEAG3.8781e-02-0.1606image
chr1:112547241-112548325:-STADABT.888EER2.3931e-02-0.3159image
chr1:112564588-112566985:-STADMethotrexateEER1.3014e-03-0.4508image
chr1:112573762-112575213:-STADAG.014699EER1.0146e-030.4786image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType