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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: NAAA (ImmuneEditome ID:27163)

1. Gene summary of enriched editing regions for NAAA

check button Gene summary
Gene informationGene symbol

NAAA

Gene ID

27163

GeneSynonymsASAHL|PLT
GeneCytomap

4q21.1

GeneTypeprotein-coding
GeneDescriptionN-acylethanolamine-hydrolyzing acid amidase|ASAH-like protein|acid ceramidase-like protein|acylsphingosine deacylase NAAA
GeneModificationdate20230517
UniprotIDQ02083;B4DVL2;D6R9S9
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr4:75914393-75915390:-ENST00000286733.7ENSG00000138744.13NAAAexonicMER115,AluSx1chr4:75914393-75915390:-.alignment
chr4:75914393-75915390:-ENST00000513045.4ENSG00000138744.13NAAAexonicMER115,AluSx1chr4:75914393-75915390:-.alignment
chr4:75916837-75918933:-ENST00000286733.7ENSG00000138744.13NAAAexonicAluY,A-rich,MER63A,AluSz,L2a,FLAM_Cchr4:75916837-75918933:-.alignment
chr4:75916837-75918933:-ENST00000507956.4ENSG00000138744.13NAAAexonicAluY,A-rich,MER63A,AluSz,L2a,FLAM_Cchr4:75916837-75918933:-.alignment
chr4:75916837-75918933:-ENST00000602782.4ENSG00000138744.13NAAAexonicAluY,A-rich,MER63A,AluSz,L2a,FLAM_Cchr4:75916837-75918933:-.alignment


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2. Tumor-specific enriched editing regions for NAAA


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot
ENSG00000138744.13,NAAABRCAEAG2.1937e-02image
ENSG00000138744.13,NAAACOADEAG2.9369e-03image
chr4:75916837-75918933:-KIRCEER2.1209e-04image
chr4:75916837-75918933:-LUADEER4.9201e-02image


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot
ENSG00000138744.13,NAAAMESOPathEAG2.0975e-021.2801e-020.4905image


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
chr4:75914393-75915390:-GBMEER4.0359e-021.9163e-025.6809e+02image
chr4:75914393-75915390:-OVEER8.0407e-031.2900e-025.1127e-04image

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3. Enriched editing regions and immune related genes for NAAA


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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4. Enriched editing regions and immune related splicing for NAAA


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

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5. Enriched editing regions and immune infiltration for NAAA


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
ENSG00000138744.13,NAAABLCAEAGB_cells_memory4.2200e-030.2784image
chr4:75914393-75915390:-BRCAEERT_cells_CD81.4614e-02-0.1418image
chr4:75916837-75918933:-BRCAEERT_cells_follicular_helper3.1971e-020.0862image
ENSG00000138744.13,NAAABRCAEAGPlasma_cells4.9360e-030.1039image
ENSG00000138744.13,NAAACESCEAGB_cells_memory1.2213e-020.3092image
ENSG00000138744.13,NAAACOADEAGPlasma_cells1.3264e-020.2829image
ENSG00000138744.13,NAAADLBCEAGDendritic_cells_resting5.8969e-030.5926image
chr4:75914393-75915390:-ESCAEERMacrophages_M24.1265e-020.3572image
ENSG00000138744.13,NAAAESCAEAGB_cells_memory4.7225e-020.1989image
chr4:75914393-75915390:-GBMEERT_cells_regulatory_(Tregs)1.9338e-02-0.5179image
chr4:75916837-75918933:-GBMEERMacrophages_M21.7128e-03-0.3657image
ENSG00000138744.13,NAAAGBMEAGMacrophages_M24.8087e-03-0.3223image
ENSG00000138744.13,NAAAHNSCEAGNK_cells_activated3.2149e-020.2383image
ENSG00000138744.13,NAAAKICHEAGMast_cells_resting8.0917e-030.5380image
chr4:75914393-75915390:-KIRCEERT_cells_CD4_memory_resting3.3176e-02-0.1770image
chr4:75916837-75918933:-KIRCEERT_cells_CD4_memory_activated1.2868e-020.1642image
ENSG00000138744.13,NAAAKIRCEAGMonocytes4.4130e-030.1700image
chr4:75914393-75915390:-KIRPEERT_cells_CD4_memory_activated2.4577e-070.6655image
ENSG00000138744.13,NAAAKIRPEAGMast_cells_activated6.0993e-040.3110image
ENSG00000138744.13,NAAALGGEAGB_cells_naive1.8215e-020.1926image
ENSG00000138744.13,NAAALIHCEAGMast_cells_activated2.1706e-020.2218image
chr4:75916837-75918933:-LUADEERT_cells_CD83.5648e-030.2150image
ENSG00000138744.13,NAAALUADEAGT_cells_CD85.9467e-030.1958image
chr4:75916837-75918933:-LUSCEERT_cells_CD81.7432e-02-0.2176image
ENSG00000138744.13,NAAALUSCEAGT_cells_follicular_helper4.6293e-02-0.1765image
ENSG00000138744.13,NAAAMESOEAGB_cells_memory9.1229e-040.6562image
chr4:75916837-75918933:-OVEERT_cells_CD4_memory_activated2.6420e-02-0.1863image
ENSG00000138744.13,NAAAOVEAGT_cells_CD4_memory_activated3.4941e-02-0.1741image
chr4:75916837-75918933:-PAADEERDendritic_cells_activated3.5077e-020.2200image
chr4:75914393-75915390:-PCPGEERT_cells_regulatory_(Tregs)4.4619e-020.1910image
chr4:75916837-75918933:-PCPGEERMacrophages_M02.7450e-030.2398image
ENSG00000138744.13,NAAAREADEAGT_cells_gamma_delta4.5057e-020.4042image
chr4:75914393-75915390:-SARCEERMacrophages_M11.7760e-030.5094image
ENSG00000138744.13,NAAASARCEAGB_cells_naive6.5740e-030.2785image
ENSG00000138744.13,NAAASKCMEAGDendritic_cells_activated2.7252e-040.3266image
chr4:75914393-75915390:-STADEERMonocytes4.3233e-02-0.2373image
chr4:75914393-75915390:-THCAEERT_cells_CD4_memory_activated3.5506e-040.6005image
ENSG00000138744.13,NAAATHCAEAGT_cells_CD4_memory_activated1.3382e-030.2179image
chr4:75916837-75918933:-UCECEERDendritic_cells_activated2.4639e-030.4500image
ENSG00000138744.13,NAAAUCECEAGDendritic_cells_activated6.6406e-030.3906image


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6. Enriched editing regions and immune gene sets for NAAA


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000138744.13,NAAAACCGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG2.2670e-02-0.5065image
ENSG00000138744.13,NAAABLCAGSVA_HALLMARK_HYPOXIAEAG1.0638e-02-0.2495image
chr4:75914393-75915390:-BRCAGSVA_HALLMARK_MITOTIC_SPINDLEEER3.8883e-030.1673image
chr4:75916837-75918933:-BRCAGSVA_HALLMARK_DNA_REPAIREER2.3794e-020.0908image
ENSG00000138744.13,NAAACOADGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG1.1562e-02-0.2883image
chr4:75914393-75915390:-GBMGSVA_HALLMARK_ESTROGEN_RESPONSE_LATEEER4.8287e-040.7076image
ENSG00000138744.13,NAAAGBMGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG1.2162e-02-0.2882image
chr4:75916837-75918933:-GBMGSVA_HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITIONEER3.8372e-03-0.3389image
ENSG00000138744.13,NAAAKICHGSVA_HALLMARK_ANDROGEN_RESPONSEEAG7.0433e-030.5459image
ENSG00000138744.13,NAAAKIRCGSVA_HALLMARK_MYC_TARGETS_V2EAG4.4464e-020.1204image
chr4:75916837-75918933:-KIRCGSVA_HALLMARK_PROTEIN_SECRETIONEER3.3807e-02-0.1403image
chr4:75914393-75915390:-KIRPGSVA_HALLMARK_CHOLESTEROL_HOMEOSTASISEER3.2062e-03-0.4168image
ENSG00000138744.13,NAAAKIRPGSVA_HALLMARK_MYOGENESISEAG1.2207e-02-0.2300image
chr4:75914393-75915390:-LAMLGSVA_HALLMARK_G2M_CHECKPOINTEER2.0917e-02-0.4005image
ENSG00000138744.13,NAAALAMLGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEAG8.7297e-03-0.3028image
chr4:75916837-75918933:-LAMLGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEER2.7462e-03-0.3800image
ENSG00000138744.13,NAAALIHCGSVA_HALLMARK_SPERMATOGENESISEAG2.0403e-02-0.2240image
chr4:75916837-75918933:-LUADGSVA_HALLMARK_APICAL_SURFACEEER3.9437e-020.1528image
ENSG00000138744.13,NAAALUADGSVA_HALLMARK_KRAS_SIGNALING_DNEAG2.2470e-020.1630image
chr4:75916837-75918933:-LUSCGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER4.4316e-02-0.1847image
ENSG00000138744.13,NAAALUSCGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEAG2.6273e-02-0.1964image
chr4:75914393-75915390:-OVGSVA_HALLMARK_PANCREAS_BETA_CELLSEER2.9603e-02-0.4640image
chr4:75916837-75918933:-OVGSVA_HALLMARK_HEME_METABOLISMEER2.8551e-02-0.1838image
ENSG00000138744.13,NAAAOVGSVA_HALLMARK_HEME_METABOLISMEAG1.0860e-02-0.2095image
chr4:75916837-75918933:-PAADGSVA_HALLMARK_HEDGEHOG_SIGNALINGEER8.0118e-03-0.2749image
ENSG00000138744.13,NAAAPAADGSVA_HALLMARK_UV_RESPONSE_DNEAG7.9315e-04-0.3318image
chr4:75916837-75918933:-PCPGGSVA_HALLMARK_DNA_REPAIREER2.3942e-02-0.1819image
ENSG00000138744.13,NAAAPCPGGSVA_HALLMARK_MITOTIC_SPINDLEEAG2.0668e-020.1834image
chr4:75914393-75915390:-PRADGSVA_HALLMARK_PROTEIN_SECRETIONEER9.0934e-040.1589image
ENSG00000138744.13,NAAAPRADGSVA_HALLMARK_ANDROGEN_RESPONSEEAG9.8238e-070.2256image
ENSG00000138744.13,NAAASARCGSVA_HALLMARK_MTORC1_SIGNALINGEAG2.3615e-03-0.3100image
chr4:75916837-75918933:-STADGSVA_HALLMARK_MITOTIC_SPINDLEEER8.4215e-03-0.1708image
chr4:75914393-75915390:-STADGSVA_HALLMARK_MITOTIC_SPINDLEEER4.4340e-030.3294image
ENSG00000138744.13,NAAATHCAGSVA_HALLMARK_MYOGENESISEAG1.3725e-030.2174image
chr4:75914393-75915390:-THCAGSVA_HALLMARK_ESTROGEN_RESPONSE_EARLYEER6.2175e-030.4805image
ENSG00000138744.13,NAAAUCECGSVA_HALLMARK_MITOTIC_SPINDLEEAG4.9360e-02-0.2883image


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7. Enriched editing regions and drugs for NAAA


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000138744.13,NAAAACCGDC0941EAG3.3780e-030.6225image
ENSG00000138744.13,NAAABLCAA.770041EAG1.0469e-020.2500image
ENSG00000138744.13,NAAABRCAAKT.inhibitor.VIIIEAG1.7825e-03-0.1155image
chr4:75914393-75915390:-BRCAAKT.inhibitor.VIIIEER8.6619e-03-0.1526image
chr4:75916837-75918933:-BRCABMS.708163EER7.6539e-040.1350image
ENSG00000138744.13,NAAACESCAZD.2281EAG2.2538e-03-0.3724image
chr4:75916837-75918933:-COADCisplatinEER2.6759e-02-0.2813image
ENSG00000138744.13,NAAACOADAZ628EAG1.7734e-030.3528image
ENSG00000138744.13,NAAADLBCElesclomolEAG4.1335e-020.4599image
chr4:75914393-75915390:-ESCALapatinibEER2.4094e-02-0.3979image
ENSG00000138744.13,NAAAESCAAZD7762EAG2.2450e-03-0.3022image
chr4:75916837-75918933:-ESCAAZD.2281EER3.7850e-02-0.2205image
chr4:75914393-75915390:-GBMJNJ.26854165EER1.1932e-02-0.5503image
ENSG00000138744.13,NAAAGBMCCT007093EAG4.0354e-03-0.3283image
chr4:75916837-75918933:-GBMCGP.60474EER2.2496e-030.3569image
ENSG00000138744.13,NAAAKIRCBexaroteneEAG1.8104e-02-0.1414image
chr4:75914393-75915390:-KIRCCCT018159EER3.6521e-020.1738image
chr4:75916837-75918933:-KIRCBI.2536EER3.0693e-03-0.1948image
chr4:75914393-75915390:-KIRPAS601245EER3.4666e-030.4137image
ENSG00000138744.13,NAAALAMLBMS.509744EAG5.3838e-030.3204image
chr4:75916837-75918933:-LAMLBMS.509744EER1.1813e-020.3231image
chr4:75914393-75915390:-LAMLDasatinibEER9.6688e-03-0.4439image
ENSG00000138744.13,NAAALIHCLapatinibEAG1.5646e-030.3153image
chr4:75916837-75918933:-LUADGNF.2EER1.3735e-020.1824image
ENSG00000138744.13,NAAALUADGNF.2EAG1.2138e-030.2295image
ENSG00000138744.13,NAAALUSCGW843682XEAG1.5620e-020.2133image
chr4:75916837-75918933:-LUSCBMS.754807EER8.9737e-03-0.2386image
ENSG00000138744.13,NAAAMESOGemcitabineEAG9.2994e-030.5412image
chr4:75914393-75915390:-OVMethotrexateEER3.5809e-02-0.4496image
chr4:75916837-75918933:-OVBleomycinEER1.3054e-02-0.2079image
ENSG00000138744.13,NAAAPAADGDC0941EAG1.5443e-020.2428image
chr4:75916837-75918933:-PAADBIBW2992EER4.6153e-04-0.3578image
chr4:75914393-75915390:-PCPGAZD6244EER1.6231e-020.2277image
ENSG00000138744.13,NAAAPCPGAZD6244EAG8.1013e-040.2630image
chr4:75916837-75918933:-PCPGEHT.1864EER3.1587e-030.2364image
chr4:75914393-75915390:-PRADBryostatin.1EER2.7931e-030.1433image
ENSG00000138744.13,NAAAPRADAZD.2281EAG2.6429e-060.2170image
ENSG00000138744.13,NAAASARCCCT007093EAG2.0418e-03-0.3142image
ENSG00000138744.13,NAAASKCMABT.263EAG5.2093e-030.2535image
ENSG00000138744.13,NAAASTADCEP.701EAG9.0778e-03-0.1634image
chr4:75916837-75918933:-STADBMS.509744EER1.5757e-02-0.1567image
chr4:75914393-75915390:-STADEpothilone.BEER1.7299e-02-0.2779image
ENSG00000138744.13,NAAATHCAGSK269962AEAG5.6292e-03-0.1887image
ENSG00000138744.13,NAAAUCECCI.1040EAG4.0319e-02-0.3002image
chr4:75916837-75918933:-UCECGDC.0449EER3.9668e-02-0.3150image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType
chr4:75914393-75915390:-ENST00000286733.7Q02083DB09061CannabidiolSmallMoleculeDrug
chr4:75916837-75918933:-ENST00000286733.7Q02083DB09061CannabidiolSmallMoleculeDrug
chr4:75916837-75918933:-ENST00000507956.4Q02083DB09061CannabidiolSmallMoleculeDrug