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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: RILPL2 (ImmuneEditome ID:196383)

1. Gene summary of enriched editing regions for RILPL2

check button Gene summary
Gene informationGene symbol

RILPL2

Gene ID

196383

GeneSynonymsRLP2
GeneCytomap

12q24.31

GeneTypeprotein-coding
GeneDescriptionRILP-like protein 2|p40phox-binding protein|rab-interacting lysosomal protein-like 2
GeneModificationdate20230329
UniprotIDQ969X0
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr12:123410947-123413167:-ENST00000280571.9ENSG00000150977.10RILPL2UTR3AluJr,AluJb,AluJo,AluSg,AluSx4,AluSg4,MIRchr12:123410947-123413167:-.alignment
chr12:123417033-123422688:-ENST00000280571.9ENSG00000150977.10RILPL2intronicAluJr,AluSc,AluJo,AluSg,AluSz,L2a,AluSc5,AluYm1,MIRb,MIR,AluSp,AluSx1,AluYchr12:123417033-123422688:-.alignment
chr12:123432361-123435741:-ENST00000280571.9ENSG00000150977.10RILPL2intronicMIR,L2c,L1ME3,AluSz,(AAG)n,AluJo,AluSx3,AluSz6,AluJb,AluScchr12:123432361-123435741:-.alignment


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2. Tumor-specific enriched editing regions for RILPL2


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot
chr12:123410947-123413167:-KIRCEER2.0945e-02image
ENSG00000150977.10,RILPL2KIRCEAG1.5492e-02image
chr12:123410947-123413167:-LUSCEER3.0678e-03image
ENSG00000150977.10,RILPL2LUSCEAG2.3959e-03image
chr12:123410947-123413167:-THCAEER6.5734e-05image
ENSG00000150977.10,RILPL2THCAEAG2.0405e-04image


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot
chr12:123410947-123413167:-THCAPathEER7.3542e-056.5015e-060.2048image
ENSG00000150977.10,RILPL2THCAPathEAG2.8876e-041.9851e-050.1940image


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot

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3. Enriched editing regions and immune related genes for RILPL2


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr12:123410947-123413167:-LAMLEERENSG00000150977,RILPL2-0.51688.9982e-052.5662e-09-0.4739imageNADAR;DKC1;EIF4A3;ELAVL1;HNRNPC;IGF2BP2NAMonocytesGSVA_HALLMARK_TNFA_SIGNALING_VIA_NFKB
chr12:123410947-123413167:-LAMLEERENSG00000107242,PIP5K1B0.44132.9235e-032.5623e-090.4739imageNADAR;DKC1;EIF4A3;ELAVL1;HNRNPC;IGF2BP2NAT_cells_regulatory_(Tregs)GSVA_HALLMARK_HEME_METABOLISM
chr12:123410947-123413167:-LAMLEERENSG00000155961,RAB39B0.43893.6850e-033.9433e-080.4410imageNDKC1;ELAVL1;HNRNPC;IGF2BP2NAMonocytesGSVA_HALLMARK_HYPOXIA
chr12:123410947-123413167:-LAMLEERENSG00000148175,STOM0.43204.6362e-033.4815e-070.4121imageNADAR;DKC1;EIF4A3;ELAVL1;HNRNPC;IGF2BP2NAT_cells_CD4_memory_restingGSVA_HALLMARK_HEME_METABOLISM
chr12:123410947-123413167:-LAMLEERENSG00000198087,CD2AP0.41127.8466e-033.2584e-070.4130imageNADAR;DKC1;EIF4A3;ELAVL1;HNRNPC;IGF2BP2CD2APT_cells_CD4_memory_restingGSVA_HALLMARK_P53_PATHWAY
chr12:123410947-123413167:-LAMLEERENSG00000066827,ZFAT0.37042.3351e-021.5007e-070.4236imageNADAR;DKC1;EIF4A3;ELAVL1;HNRNPC;IGF2BP2NAT_cells_CD4_memory_activatedGSVA_HALLMARK_CHOLESTEROL_HOMEOSTASIS

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4. Enriched editing regions and immune related splicing for RILPL2


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

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5. Enriched editing regions and immune infiltration for RILPL2


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr12:123410947-123413167:-BLCAEERT_cells_CD4_memory_resting2.9028e-020.2611image
ENSG00000150977.10,RILPL2BLCAEAGT_cells_CD4_memory_resting2.1648e-020.2666image
ENSG00000150977.10,RILPL2BRCAEAGNK_cells_activated4.4786e-02-0.0847image
chr12:123410947-123413167:-DLBCEERNK_cells_activated6.6008e-030.4703image
ENSG00000150977.10,RILPL2DLBCEAGNK_cells_activated5.0397e-030.4837image
chr12:123410947-123413167:-GBMEERNeutrophils1.4220e-02-0.2732image
ENSG00000150977.10,RILPL2GBMEAGNeutrophils1.2147e-02-0.2792image
ENSG00000150977.10,RILPL2HNSCEAGT_cells_CD4_memory_activated4.9794e-02-0.2201image
chr12:123410947-123413167:-KICHEEREosinophils1.1067e-020.4899image
ENSG00000150977.10,RILPL2KICHEAGEosinophils1.1067e-020.4899image
chr12:123410947-123413167:-KIRCEERNK_cells_resting1.9007e-02-0.1302image
ENSG00000150977.10,RILPL2KIRCEAGNK_cells_resting2.4195e-02-0.1248image
chr12:123410947-123413167:-KIRPEEREosinophils1.6273e-040.2752image
ENSG00000150977.10,RILPL2KIRPEAGEosinophils1.7907e-040.2714image
chr12:123410947-123413167:-LAMLEERT_cells_gamma_delta4.6535e-030.2362image
chr12:123417033-123422688:-LAMLEERT_cells_regulatory_(Tregs)3.4021e-050.3487image
chr12:123432361-123435741:-LAMLEERMonocytes1.8354e-03-0.2620image
ENSG00000150977.10,RILPL2LAMLEAGT_cells_regulatory_(Tregs)1.8378e-040.3008image
chr12:123410947-123413167:-LGGEERT_cells_regulatory_(Tregs)2.4604e-020.2368image
ENSG00000150977.10,RILPL2LGGEAGT_cells_regulatory_(Tregs)2.1411e-020.2371image
chr12:123410947-123413167:-LUSCEERMacrophages_M21.8353e-020.2206image
ENSG00000150977.10,RILPL2LUSCEAGMacrophages_M01.7759e-020.2161image
ENSG00000150977.10,RILPL2PAADEAGMacrophages_M26.2018e-040.4764image
chr12:123410947-123413167:-STADEERMacrophages_M11.4623e-020.1864image
chr12:123417033-123422688:-STADEERDendritic_cells_activated1.4021e-02-0.2704image
ENSG00000150977.10,RILPL2STADEAGMacrophages_M11.1313e-020.1806image
chr12:123410947-123413167:-THCAEERNK_cells_activated7.5819e-04-0.1535image
ENSG00000150977.10,RILPL2THCAEAGNK_cells_activated1.0411e-03-0.1494image
chr12:123410947-123413167:-THYMEERPlasma_cells9.2921e-030.4219image
ENSG00000150977.10,RILPL2THYMEAGPlasma_cells1.2616e-020.3958image


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6. Enriched editing regions and immune gene sets for RILPL2


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000150977.10,RILPL2BRCAGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEAG1.6365e-040.1584image
chr12:123410947-123413167:-BRCAGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER5.4139e-040.1468image
chr12:123410947-123413167:-CESCGSVA_HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITIONEER1.9821e-02-0.3462image
ENSG00000150977.10,RILPL2CESCGSVA_HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITIONEAG9.8332e-03-0.3769image
ENSG00000150977.10,RILPL2DLBCGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEAG4.3491e-020.3592image
chr12:123417033-123422688:-ESCAGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEER1.6893e-020.4328image
ENSG00000150977.10,RILPL2ESCAGSVA_HALLMARK_TNFA_SIGNALING_VIA_NFKBEAG1.0966e-02-0.3089image
chr12:123410947-123413167:-ESCAGSVA_HALLMARK_ALLOGRAFT_REJECTIONEER4.1559e-02-0.2685image
ENSG00000150977.10,RILPL2HNSCGSVA_HALLMARK_HYPOXIAEAG4.7502e-020.2223image
ENSG00000150977.10,RILPL2KIRCGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG4.8256e-04-0.1922image
chr12:123410947-123413167:-KIRCGSVA_HALLMARK_PEROXISOMEEER1.0456e-030.1813image
ENSG00000150977.10,RILPL2KIRPGSVA_HALLMARK_ESTROGEN_RESPONSE_EARLYEAG2.3335e-030.2219image
chr12:123410947-123413167:-KIRPGSVA_HALLMARK_ESTROGEN_RESPONSE_EARLYEER7.4504e-040.2471image
chr12:123432361-123435741:-LAMLGSVA_HALLMARK_NOTCH_SIGNALINGEER1.3493e-03-0.2693image
chr12:123410947-123413167:-LAMLGSVA_HALLMARK_GLYCOLYSISEER8.5528e-03-0.2199image
chr12:123417033-123422688:-LAMLGSVA_HALLMARK_TNFA_SIGNALING_VIA_NFKBEER1.3648e-02-0.2118image
ENSG00000150977.10,RILPL2LAMLGSVA_HALLMARK_TNFA_SIGNALING_VIA_NFKBEAG6.4961e-04-0.2753image
chr12:123410947-123413167:-LGGGSVA_HALLMARK_P53_PATHWAYEER2.5094e-02-0.2361image
ENSG00000150977.10,RILPL2LGGGSVA_HALLMARK_MITOTIC_SPINDLEEAG1.3370e-020.2543image
chr12:123410947-123413167:-LUSCGSVA_HALLMARK_COAGULATIONEER3.6966e-020.1956image
ENSG00000150977.10,RILPL2LUSCGSVA_HALLMARK_MYOGENESISEAG1.6871e-020.2178image
ENSG00000150977.10,RILPL2MESOGSVA_HALLMARK_PI3K_AKT_MTOR_SIGNALINGEAG3.2497e-02-0.3523image
chr12:123410947-123413167:-MESOGSVA_HALLMARK_PI3K_AKT_MTOR_SIGNALINGEER3.3500e-02-0.3603image
ENSG00000150977.10,RILPL2OVGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG3.2306e-020.2198image
chr12:123410947-123413167:-OVGSVA_HALLMARK_ESTROGEN_RESPONSE_EARLYEER4.0254e-020.2204image
ENSG00000150977.10,RILPL2PAADGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG7.3808e-030.3820image
ENSG00000150977.10,RILPL2PCPGGSVA_HALLMARK_G2M_CHECKPOINTEAG3.7088e-040.5238image
ENSG00000150977.10,RILPL2SKCMGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG4.6291e-050.4245image
chr12:123410947-123413167:-SKCMGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER1.5957e-050.4495image
chr12:123410947-123413167:-STADGSVA_HALLMARK_MYC_TARGETS_V1EER6.3991e-030.2078image
ENSG00000150977.10,RILPL2STADGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG2.2731e-030.2168image
ENSG00000150977.10,RILPL2TGCTGSVA_HALLMARK_PROTEIN_SECRETIONEAG1.7486e-020.5127image
ENSG00000150977.10,RILPL2THCAGSVA_HALLMARK_ESTROGEN_RESPONSE_EARLYEAG1.3940e-090.2722image
chr12:123410947-123413167:-THCAGSVA_HALLMARK_ESTROGEN_RESPONSE_EARLYEER3.3629e-090.2662image
ENSG00000150977.10,RILPL2THYMGSVA_HALLMARK_KRAS_SIGNALING_DNEAG3.3655e-020.3410image


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7. Enriched editing regions and drugs for RILPL2


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
chr12:123410947-123413167:-BLCABMS.509744EER3.5823e-020.2514image
ENSG00000150977.10,RILPL2BLCABMS.509744EAG3.8771e-020.2408image
ENSG00000150977.10,RILPL2BRCAJNK.Inhibitor.VIIIEAG1.0055e-02-0.1086image
chr12:123410947-123413167:-BRCAAxitinibEER3.3930e-020.0904image
ENSG00000150977.10,RILPL2CESCDocetaxelEAG8.9838e-030.3810image
chr12:123410947-123413167:-CESCDocetaxelEER1.1751e-020.3724image
ENSG00000150977.10,RILPL2DLBCAG.014699EAG8.3973e-03-0.4580image
chr12:123410947-123413167:-DLBCAZD8055EER1.0733e-02-0.4449image
chr12:123410947-123413167:-ESCABryostatin.1EER3.9285e-03-0.3730image
ENSG00000150977.10,RILPL2ESCAIPA.3EAG3.0553e-020.2645image
ENSG00000150977.10,RILPL2GBMErlotinibEAG6.8265e-04-0.3719image
chr12:123410947-123413167:-GBMErlotinibEER7.4742e-04-0.3693image
ENSG00000150977.10,RILPL2HNSCDoxorubicinEAG4.8832e-030.3117image
chr12:123410947-123413167:-HNSCDoxorubicinEER1.5153e-020.2741image
chr12:123410947-123413167:-KICHABT.263EER2.3760e-020.4420image
ENSG00000150977.10,RILPL2KICHABT.263EAG2.3760e-020.4420image
ENSG00000150977.10,RILPL2KIRCAZ628EAG4.3384e-050.2248image
chr12:123410947-123413167:-KIRCAZ628EER1.3965e-040.2104image
ENSG00000150977.10,RILPL2KIRPBicalutamideEAG7.8470e-05-0.2854image
chr12:123410947-123413167:-KIRPBicalutamideEER2.8787e-05-0.3039image
chr12:123432361-123435741:-LAMLCGP.60474EER8.1650e-030.2235image
chr12:123417033-123422688:-LAMLAG.014699EER9.4971e-03-0.2225image
ENSG00000150977.10,RILPL2LAMLIPA.3EAG6.1906e-07-0.3938image
chr12:123410947-123413167:-LAMLFH535EER3.0496e-100.4973image
chr12:123410947-123413167:-LGGAZD6482EER2.8903e-03-0.3106image
ENSG00000150977.10,RILPL2LGGAZD6482EAG7.5768e-04-0.3414image
ENSG00000150977.10,RILPL2LUADBMS.754807EAG3.3219e-020.1776image
ENSG00000150977.10,RILPL2LUSCEtoposideEAG2.6972e-020.2020image
chr12:123410947-123413167:-LUSCEtoposideEER3.1729e-020.2013image
ENSG00000150977.10,RILPL2MESOKU.55933EAG3.9617e-020.3398image
chr12:123410947-123413167:-MESOKU.55933EER1.1280e-020.4233image
chr12:123410947-123413167:-OVAZD.0530EER4.7105e-02-0.2135image
ENSG00000150977.10,RILPL2PAADCytarabineEAG9.9308e-030.3686image
ENSG00000150977.10,RILPL2PCPGAZD6244EAG2.2742e-020.3508image
ENSG00000150977.10,RILPL2PRADGSK.650394EAG7.7566e-030.1498image
chr12:123410947-123413167:-PRADGSK.650394EER1.5973e-020.1365image
ENSG00000150977.10,RILPL2SKCMFH535EAG5.6569e-03-0.2960image
chr12:123410947-123413167:-SKCMFH535EER9.4280e-03-0.2801image
chr12:123410947-123413167:-STADAG.014699EER7.8025e-030.2028image
ENSG00000150977.10,RILPL2STADAG.014699EAG2.8549e-020.1564image
chr12:123417033-123422688:-STADAICAREER2.8665e-020.2418image
ENSG00000150977.10,RILPL2TGCTFH535EAG4.4433e-03-0.5949image
chr12:123410947-123413167:-THCACI.1040EER3.8074e-09-0.2654image
ENSG00000150977.10,RILPL2THCACI.1040EAG3.6597e-07-0.2299image
chr12:123410947-123413167:-THYMJNK.9LEER1.0935e-020.4136image
ENSG00000150977.10,RILPL2THYMCamptothecinEAG1.6666e-020.3812image
chr12:123410947-123413167:-UCECCMKEER9.3125e-04-0.3953image
ENSG00000150977.10,RILPL2UCECDMOGEAG8.4992e-030.3080image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType