CAeditome Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: ZNF570 (ImmuneEditome ID:148268)

1. Gene summary of enriched editing regions for ZNF570

check button Gene summary
Gene informationGene symbol

ZNF570

Gene ID

148268

GeneSynonyms-
GeneCytomap

19q13.12

GeneTypeprotein-coding
GeneDescriptionzinc finger protein 570
GeneModificationdate20230518
UniprotIDQ96NI8;K7EQY8;K7EMF5;K7EP39;K7ENX9;K7EP64
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr19:37485412-37487196:+ENST00000330173.4ENSG00000171827.9ZNF570UTR3L2,AluSz6,AluSg,MIR,MIRb,AluSpchr19:37485412-37487196:+.alignment


Top

2. Tumor-specific enriched editing regions for ZNF570


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot


Top

check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot


Top

check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot

Top

3. Enriched editing regions and immune related genes for ZNF570


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr19:37485412-37487196:+GBMEERENSG00000136485,DCAF7-0.46914.2879e-053.6273e-08-0.4618imageNELAVL1;NOP58;FBL;NOP56;RBM10NAMonocytesGSVA_HALLMARK_MITOTIC_SPINDLE
chr19:37485412-37487196:+GBMEERENSG00000167447,SMG8-0.46255.5167e-052.1801e-07-0.4374imageNELAVL1;NOP58;FBL;NOP56;RBM10NAMacrophages_M1GSVA_HALLMARK_G2M_CHECKPOINT
chr19:37485412-37487196:+GBMEERENSG00000170836,PPM1D-0.45815.6309e-052.0060e-07-0.4386imageNELAVL1;NOP58;FBL;NOP56;RBM10NAMonocytesGSVA_HALLMARK_E2F_TARGETS
chr19:37485412-37487196:+GBMEERENSG00000005156,LIG3-0.45139.3510e-052.6051e-07-0.4349imageNELAVL1;NOP58;FBL;NOP56;RBM10NAMonocytesGSVA_HALLMARK_G2M_CHECKPOINT
chr19:37485412-37487196:+GBMEERENSG00000136451,VEZF1-0.45169.4512e-052.4740e-08-0.4667imageNELAVL1;NOP58;FBL;NOP56;RBM10VEZF1T_cells_CD4_memory_activatedGSVA_HALLMARK_COAGULATION
chr19:37485412-37487196:+GBMEERENSG00000185009,AP3M1-0.43731.1638e-045.4042e-07-0.4243imageNELAVL1;NOP58;FBL;NOP56;RBM10NAMonocytesGSVA_HALLMARK_MITOTIC_SPINDLE
chr19:37485412-37487196:+GBMEERENSG00000204366,ZBTB12-0.44261.4920e-043.8352e-07-0.4293imageNELAVL1;NOP58;FBL;NOP56NAMonocytesGSVA_HALLMARK_G2M_CHECKPOINT
chr19:37485412-37487196:+GBMEERENSG00000068796,KIF2A-0.43512.1266e-042.1995e-06-0.4029imageNELAVL1;NOP58;FBL;NOP56;RBM10NAT_cells_gamma_deltaGSVA_HALLMARK_SPERMATOGENESIS
chr19:37485412-37487196:+GBMEERENSG00000036257,CUL3-0.43332.2860e-043.0324e-08-0.4641imageNELAVL1;NOP58;FBL;NOP56;RBM10CUL3MonocytesGSVA_HALLMARK_MITOTIC_SPINDLE
chr19:37485412-37487196:+GBMEERENSG00000089094,KDM2B-0.43292.2899e-041.9111e-07-0.4393imageNELAVL1;NOP58;FBL;NOP56;RBM10NAMonocytesGSVA_HALLMARK_XENOBIOTIC_METABOLISM

More results



Top

4. Enriched editing regions and immune related splicing for ZNF570


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
ENSG00000171827.9,ZNF570
GBMEAGESENSG00000144354.9chr2173358714:173358837:173359254:173359491:173363225:173363462-0.32211.7605e-021.9534e-06-0.4340imageNADAR;CAPRIN1;CELF2;CNBP;DDX54;DICER1;ELAVL1;FBL;FMR1;FUS;FXR1;FXR2;HNRNPA1;HNRNPA2B1;HNRNPC;HNRNPK;HNRNPM;IGF2BP1;IGF2BP2;KHDRBS2;KHDRBS3;KHSRP;LIN28B;MOV10;NOP56;NOP58;PRPF8;PTBP1;QKI;RBFOX2;RBM10;RBM47;SRSF1;SRSF9;TAF15;TARDBP;TIA1;U2AF2;UPF1;ZC3H7B;ZNF184NAT_cells_follicular_helperGSVA_HALLMARK_SPERMATOGENESIS
chr19:37485412-37487196:+
GBMEERA5ENSG00000161939.14chr177015061:7015156:7014144:7014277:7014144:70148780.33284.4337e-022.3155e-060.4021imageNELAVL1;NOP58;FBL;NOP56;RBM10NAMacrophages_M0GSVA_HALLMARK_G2M_CHECKPOINT
chr19:37485412-37487196:+
GBMEERESENSG00000144354.9chr2173358714:173358837:173359254:173359491:173363225:173363462-0.32211.5029e-021.9534e-06-0.4340imageNELAVL1;NOP58;FBL;NOP56;RBM10NAT_cells_follicular_helperGSVA_HALLMARK_SPERMATOGENESIS
chr19:37485412-37487196:+
GBMEERESENSG00000147044.16chrX41555599:41555635:41557031:41557100:41559778:41559847-0.40911.8571e-031.4550e-06-0.4094imageNELAVL1;NOP58;FBL;NOP56;RBM10CASKT_cells_follicular_helperGSVA_HALLMARK_BILE_ACID_METABOLISM
ENSG00000171827.9,ZNF570
GBMEAGESENSG00000147044.16chrX41555599:41555635:41557031:41557100:41559778:41559847-0.40912.1432e-031.4550e-06-0.4094imageNADAR;CELF2;CNBP;DDX54;DHX9;DICER1;ELAVL1;ELAVL3;FBL;FMR1;FUS;FXR1;FXR2;HNRNPA1;HNRNPA2B1;HNRNPC;HNRNPK;HNRNPL;HNRNPM;IGF2BP1;IGF2BP2;KHDRBS2;KHDRBS3;KHSRP;LIN28B;MOV10;NOP56;NOP58;PRPF8;PTBP1;QKI;RBFOX2;RBM10;RBM47;SRSF1;SRSF9;TAF15;TARDBP;TIA1;U2AF2;UPF1;ZC3H7BCASKT_cells_follicular_helperGSVA_HALLMARK_BILE_ACID_METABOLISM

More results



Top

5. Enriched editing regions and immune infiltration for ZNF570


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr19:37485412-37487196:+BLCAEEREosinophils2.9045e-020.3412image
ENSG00000171827.9,ZNF570BLCAEAGEosinophils2.9045e-020.3412image
chr19:37485412-37487196:+BRCAEERMast_cells_resting4.9124e-03-0.1266image
ENSG00000171827.9,ZNF570BRCAEAGMast_cells_resting4.9080e-03-0.1266image
chr19:37485412-37487196:+GBMEERMonocytes1.1584e-020.2217image
ENSG00000171827.9,ZNF570GBMEAGMonocytes1.1584e-020.2217image
chr19:37485412-37487196:+KIRCEERT_cells_follicular_helper6.8473e-030.2284image
ENSG00000171827.9,ZNF570KIRCEAGT_cells_follicular_helper6.8473e-030.2284image
chr19:37485412-37487196:+KIRPEERMonocytes8.5708e-030.3451image
ENSG00000171827.9,ZNF570KIRPEAGMonocytes8.5708e-030.3451image
chr19:37485412-37487196:+LGGEERMast_cells_activated7.6618e-030.1647image
ENSG00000171827.9,ZNF570LGGEAGMast_cells_activated7.6618e-030.1647image
chr19:37485412-37487196:+PAADEEREosinophils4.6877e-020.4281image
ENSG00000171827.9,ZNF570PAADEAGEosinophils4.6877e-020.4281image
chr19:37485412-37487196:+PCPGEERT_cells_CD4_memory_resting4.9005e-03-0.3918image
ENSG00000171827.9,ZNF570PCPGEAGT_cells_CD4_memory_resting4.9005e-03-0.3918image
chr19:37485412-37487196:+PRADEERT_cells_CD82.7172e-020.2088image
ENSG00000171827.9,ZNF570PRADEAGT_cells_CD82.7172e-020.2088image
chr19:37485412-37487196:+TGCTEERNeutrophils8.8372e-030.3108image
ENSG00000171827.9,ZNF570TGCTEAGNeutrophils8.8372e-030.3108image


Top

6. Enriched editing regions and immune gene sets for ZNF570


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


Top

check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


Top

check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
chr19:37485412-37487196:+BLCAGSVA_HALLMARK_TGF_BETA_SIGNALINGEER8.5547e-03-0.4054image
ENSG00000171827.9,ZNF570BLCAGSVA_HALLMARK_TGF_BETA_SIGNALINGEAG8.5547e-03-0.4054image
chr19:37485412-37487196:+BRCAGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER8.2329e-030.1190image
ENSG00000171827.9,ZNF570BRCAGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG8.2466e-030.1190image
ENSG00000171827.9,ZNF570GBMGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG3.7222e-05-0.3547image
chr19:37485412-37487196:+GBMGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER3.7222e-05-0.3547image
ENSG00000171827.9,ZNF570HNSCGSVA_HALLMARK_PEROXISOMEEAG4.0883e-020.4294image
chr19:37485412-37487196:+HNSCGSVA_HALLMARK_PEROXISOMEEER4.0883e-020.4294image
chr19:37485412-37487196:+KIRCGSVA_HALLMARK_COAGULATIONEER2.5187e-020.1898image
ENSG00000171827.9,ZNF570KIRCGSVA_HALLMARK_COAGULATIONEAG2.5187e-020.1898image
chr19:37485412-37487196:+LGGGSVA_HALLMARK_APICAL_SURFACEEER1.1386e-040.2366image
ENSG00000171827.9,ZNF570LGGGSVA_HALLMARK_APICAL_SURFACEEAG1.1386e-040.2366image
ENSG00000171827.9,ZNF570LUADGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG3.6816e-02-0.2595image
chr19:37485412-37487196:+LUADGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER3.6816e-02-0.2595image
ENSG00000171827.9,ZNF570OVGSVA_HALLMARK_MITOTIC_SPINDLEEAG2.5364e-030.2790image
chr19:37485412-37487196:+OVGSVA_HALLMARK_MITOTIC_SPINDLEEER2.5364e-030.2790image
ENSG00000171827.9,ZNF570PAADGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG4.6946e-03-0.5796image
chr19:37485412-37487196:+PAADGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER4.6946e-03-0.5796image
chr19:37485412-37487196:+PRADGSVA_HALLMARK_ANDROGEN_RESPONSEEER1.9052e-02-0.2213image
ENSG00000171827.9,ZNF570PRADGSVA_HALLMARK_ANDROGEN_RESPONSEEAG1.9052e-02-0.2213image
ENSG00000171827.9,ZNF570SARCGSVA_HALLMARK_P53_PATHWAYEAG4.5881e-02-0.3026image
chr19:37485412-37487196:+SARCGSVA_HALLMARK_P53_PATHWAYEER4.5881e-02-0.3026image
chr19:37485412-37487196:+SKCMGSVA_HALLMARK_UV_RESPONSE_UPEER9.2189e-040.3471image
ENSG00000171827.9,ZNF570SKCMGSVA_HALLMARK_UV_RESPONSE_UPEAG9.2189e-040.3471image
ENSG00000171827.9,ZNF570STADGSVA_HALLMARK_UV_RESPONSE_DNEAG2.3955e-030.4282image
chr19:37485412-37487196:+STADGSVA_HALLMARK_UV_RESPONSE_DNEER3.2469e-030.4206image
ENSG00000171827.9,ZNF570TGCTGSVA_HALLMARK_TGF_BETA_SIGNALINGEAG8.0647e-03-0.3143image
chr19:37485412-37487196:+TGCTGSVA_HALLMARK_TGF_BETA_SIGNALINGEER8.0647e-03-0.3143image


Top

7. Enriched editing regions and drugs for ZNF570


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000171827.9,ZNF570BLCAJNJ.26854165EAG9.0025e-030.4029image
chr19:37485412-37487196:+BLCAJNJ.26854165EER9.0025e-030.4029image
ENSG00000171827.9,ZNF570BRCAFH535EAG3.9624e-02-0.0928image
chr19:37485412-37487196:+BRCAFH535EER3.9608e-02-0.0928image
chr19:37485412-37487196:+GBMBI.D1870EER8.9813e-060.3799image
ENSG00000171827.9,ZNF570GBMBI.D1870EAG8.9813e-060.3799image
ENSG00000171827.9,ZNF570HNSCCMKEAG2.8190e-020.4574image
chr19:37485412-37487196:+HNSCCMKEER2.8190e-020.4574image
ENSG00000171827.9,ZNF570KIRCBIRB.0796EAG2.7268e-030.2524image
chr19:37485412-37487196:+KIRCBIRB.0796EER2.7268e-030.2524image
ENSG00000171827.9,ZNF570KIRPEpothilone.BEAG2.6915e-04-0.4649image
chr19:37485412-37487196:+KIRPEpothilone.BEER2.6915e-04-0.4649image
chr19:37485412-37487196:+LGGLFM.A13EER1.0463e-03-0.2018image
ENSG00000171827.9,ZNF570LGGLFM.A13EAG1.0463e-03-0.2018image
chr19:37485412-37487196:+LUADCCT018159EER2.8154e-02-0.2724image
ENSG00000171827.9,ZNF570LUADCCT018159EAG2.8154e-02-0.2724image
ENSG00000171827.9,ZNF570OVABT.263EAG6.5914e-03-0.2520image
chr19:37485412-37487196:+OVABT.263EER6.5914e-03-0.2520image
ENSG00000171827.9,ZNF570PAADAxitinibEAG1.0646e-02-0.5330image
chr19:37485412-37487196:+PAADAxitinibEER1.0646e-02-0.5330image
chr19:37485412-37487196:+PCPGDMOGEER4.9960e-03-0.3910image
ENSG00000171827.9,ZNF570PCPGDMOGEAG4.9960e-03-0.3910image
chr19:37485412-37487196:+PRADBMS.509744EER1.0630e-02-0.2405image
ENSG00000171827.9,ZNF570PRADBMS.509744EAG1.0630e-02-0.2405image
ENSG00000171827.9,ZNF570SARCAZD.0530EAG3.5714e-02-0.3175image
chr19:37485412-37487196:+SARCAZD.0530EER3.5714e-02-0.3175image
ENSG00000171827.9,ZNF570SKCMCCT007093EAG9.1718e-030.2763image
chr19:37485412-37487196:+SKCMCCT007093EER9.1718e-030.2763image
ENSG00000171827.9,ZNF570STADGSK.650394EAG2.1165e-04-0.5102image
chr19:37485412-37487196:+STADGSK.650394EER2.1016e-04-0.5153image
ENSG00000171827.9,ZNF570TGCTFTI.277EAG6.2057e-030.3241image
chr19:37485412-37487196:+TGCTFTI.277EER6.2057e-030.3241image
ENSG00000171827.9,ZNF570THCACytarabineEAG3.9217e-02-0.1691image
chr19:37485412-37487196:+THCACytarabineEER3.9217e-02-0.1691image


Top

check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType