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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: C4orf36 (ImmuneEditome ID:132989)

1. Gene summary of enriched editing regions for C4orf36

check button Gene summary
Gene informationGene symbol

C4orf36

Gene ID

132989

GeneSynonyms-
GeneCytomap

4q21.3

GeneTypeprotein-coding
GeneDescriptionuncharacterized protein C4orf36
GeneModificationdate20230415
UniprotIDQ96KX1;D6RGW9;D6RCP1;D6RAE1;D6RF10
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr4:86919402-86920016:-ENST00000503001.4ENSG00000163633.9C4orf36ncRNA_intronicMSTD-int,AluSz,AluJrchr4:86919402-86920016:-.alignment
chr4:86922963-86926179:-ENST00000506484.1ENSG00000163633.9C4orf36ncRNA_exonicL1MEh,AluSx1,MSTA,AluJo,AluSz6,AluJb,FLAM_A,AluSq2,LTR41C,AluSzchr4:86922963-86926179:-.alignment
chr4:86922963-86926179:-ENST00000508280.4ENSG00000163633.9C4orf36ncRNA_exonicL1MEh,AluSx1,MSTA,AluJo,AluSz6,AluJb,FLAM_A,AluSq2,LTR41C,AluSzchr4:86922963-86926179:-.alignment
chr4:86931530-86932352:-ENST00000506484.1ENSG00000163633.9C4orf36ncRNA_exonicAluSp,AluY,AluJochr4:86931530-86932352:-.alignment


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2. Tumor-specific enriched editing regions for C4orf36


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot
chr4:86922963-86926179:-BRCAEER6.6380e-04image
ENSG00000163633.9,C4orf36BRCAEAG5.2488e-05image
chr4:86922963-86926179:-KIRCEER3.0066e-02image
ENSG00000163633.9,C4orf36KIRCEAG6.9245e-03image
chr4:86922963-86926179:-KIRPEER7.0026e-08image
ENSG00000163633.9,C4orf36KIRPEAG4.5494e-08image
chr4:86922963-86926179:-THCAEER1.1897e-05image
ENSG00000163633.9,C4orf36THCAEAG2.4729e-06image


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
ENSG00000163633.9,C4orf36LAMLEAG4.7350e-027.7363e-032.8226e+03image

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3. Enriched editing regions and immune related genes for C4orf36


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr4:86922963-86926179:-KICHEERENSG00000268471,DKFZP434I0714-0.52824.1194e-026.3303e-04-0.4158imageNFUS;IGF2BP1NAMonocytesGSVA_HALLMARK_XENOBIOTIC_METABOLISM
chr4:86922963-86926179:-KICHEERENSG00000268471,DKFZP434I0714-0.52824.1194e-026.3303e-04-0.4158imageNFUS;IGF2BP1NAMonocytesGSVA_HALLMARK_XENOBIOTIC_METABOLISM

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4. Enriched editing regions and immune related splicing for C4orf36


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

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5. Enriched editing regions and immune infiltration for C4orf36


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
ENSG00000163633.9,C4orf36BLCAEAGMacrophages_M01.7716e-020.4448image
chr4:86922963-86926179:-ESCAEERMacrophages_M19.0089e-030.2405image
ENSG00000163633.9,C4orf36ESCAEAGT_cells_gamma_delta1.2110e-070.4537image
chr4:86922963-86926179:-GBMEERDendritic_cells_activated2.1401e-030.2897image
ENSG00000163633.9,C4orf36GBMEAGDendritic_cells_activated1.8002e-030.2918image
ENSG00000163633.9,C4orf36HNSCEAGDendritic_cells_activated6.5639e-050.7725image
chr4:86922963-86926179:-KICHEERPlasma_cells3.6445e-030.3583image
ENSG00000163633.9,C4orf36KICHEAGPlasma_cells3.5060e-030.3597image
chr4:86922963-86926179:-KIRCEERNK_cells_activated4.0664e-030.1609image
ENSG00000163633.9,C4orf36KIRCEAGNK_cells_activated2.3751e-030.1685image
chr4:86922963-86926179:-KIRPEERT_cells_regulatory_(Tregs)3.5144e-020.1558image
ENSG00000163633.9,C4orf36KIRPEAGT_cells_regulatory_(Tregs)2.8368e-020.1608image
ENSG00000163633.9,C4orf36LAMLEAGT_cells_gamma_delta3.9735e-020.3225image
chr4:86922963-86926179:-LGGEERT_cells_follicular_helper2.4503e-020.1397image
ENSG00000163633.9,C4orf36LGGEAGT_cells_follicular_helper4.0768e-020.1260image
chr4:86922963-86926179:-LUADEERMacrophages_M04.9639e-02-0.2149image
ENSG00000163633.9,C4orf36LUADEAGMacrophages_M03.3670e-02-0.2137image
chr4:86922963-86926179:-LUSCEERB_cells_memory1.7541e-020.4802image
ENSG00000163633.9,C4orf36LUSCEAGB_cells_memory3.8499e-020.3513image
chr4:86922963-86926179:-MESOEERT_cells_regulatory_(Tregs)3.3386e-030.6231image
ENSG00000163633.9,C4orf36MESOEAGT_cells_regulatory_(Tregs)4.6491e-030.6057image
chr4:86922963-86926179:-OVEERDendritic_cells_resting1.4627e-02-0.1843image
ENSG00000163633.9,C4orf36OVEAGMacrophages_M24.5106e-03-0.2041image
chr4:86922963-86926179:-PCPGEERMacrophages_M02.5800e-020.2218image
ENSG00000163633.9,C4orf36PCPGEAGMacrophages_M02.6585e-020.2207image
chr4:86922963-86926179:-PRADEERMacrophages_M23.5810e-030.2026image
ENSG00000163633.9,C4orf36PRADEAGDendritic_cells_activated8.0730e-040.2258image
ENSG00000163633.9,C4orf36SARCEAGMast_cells_activated2.9898e-020.3074image
chr4:86922963-86926179:-SKCMEERB_cells_naive4.5750e-02-0.2431image
ENSG00000163633.9,C4orf36SKCMEAGT_cells_regulatory_(Tregs)4.6782e-03-0.3211image
chr4:86922963-86926179:-STADEERMacrophages_M12.8495e-020.1448image
chr4:86931530-86932352:-STADEERDendritic_cells_activated1.4997e-030.2300image
ENSG00000163633.9,C4orf36STADEAGDendritic_cells_resting3.0242e-02-0.1357image


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6. Enriched editing regions and immune gene sets for C4orf36


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot
ENSG00000163633.9,C4orf36ESCAEAG9.2282e-040.29394.4684e-020.18066.2533e-040.30308.3135e-030.2360image
chr4:86922963-86926179:-ESCAEER1.0668e-020.23534.8144e-020.18311.3199e-020.22854.1041e-020.1892image


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000163633.9,C4orf36BRCAGSVA_HALLMARK_GLYCOLYSISEAG4.5786e-030.1672image
chr4:86922963-86926179:-BRCAGSVA_HALLMARK_GLYCOLYSISEER1.8180e-020.1520image
chr4:86922963-86926179:-CESCGSVA_HALLMARK_P53_PATHWAYEER3.1072e-020.4236image
ENSG00000163633.9,C4orf36CESCGSVA_HALLMARK_P53_PATHWAYEAG4.9393e-020.3818image
ENSG00000163633.9,C4orf36COADGSVA_HALLMARK_DNA_REPAIREAG5.1092e-03-0.4019image
chr4:86922963-86926179:-ESCAGSVA_HALLMARK_PI3K_AKT_MTOR_SIGNALINGEER1.3350e-030.2932image
ENSG00000163633.9,C4orf36ESCAGSVA_HALLMARK_APICAL_JUNCTIONEAG2.5720e-030.2685image
ENSG00000163633.9,C4orf36KICHGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG2.4383e-020.2812image
ENSG00000163633.9,C4orf36KIRCGSVA_HALLMARK_MYC_TARGETS_V2EAG1.4840e-020.1355image
chr4:86922963-86926179:-KIRCGSVA_HALLMARK_MYC_TARGETS_V2EER3.9904e-020.1155image
chr4:86922963-86926179:-KIRPGSVA_HALLMARK_UV_RESPONSE_DNEER4.1376e-05-0.2982image
ENSG00000163633.9,C4orf36KIRPGSVA_HALLMARK_MITOTIC_SPINDLEEAG4.5013e-06-0.3291image
ENSG00000163633.9,C4orf36LAMLGSVA_HALLMARK_BILE_ACID_METABOLISMEAG4.7228e-02-0.3118image
ENSG00000163633.9,C4orf36LUADGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEAG1.9102e-030.3082image
chr4:86922963-86926179:-LUADGSVA_HALLMARK_CHOLESTEROL_HOMEOSTASISEER3.7158e-030.3132image
chr4:86922963-86926179:-LUSCGSVA_HALLMARK_APICAL_SURFACEEER9.6767e-030.5170image
chr4:86922963-86926179:-OVGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEER1.9480e-020.1765image
ENSG00000163633.9,C4orf36OVGSVA_HALLMARK_DNA_REPAIREAG2.9367e-020.1573image
chr4:86922963-86926179:-PCPGGSVA_HALLMARK_MYOGENESISEER8.2026e-030.2617image
ENSG00000163633.9,C4orf36PCPGGSVA_HALLMARK_MYOGENESISEAG8.2095e-030.2617image
ENSG00000163633.9,C4orf36PRADGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG1.7387e-03-0.2114image
chr4:86922963-86926179:-PRADGSVA_HALLMARK_SPERMATOGENESISEER1.1130e-020.1770image
ENSG00000163633.9,C4orf36READGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG4.1873e-02-0.3802image
ENSG00000163633.9,C4orf36SARCGSVA_HALLMARK_ANDROGEN_RESPONSEEAG2.0402e-020.3271image
chr4:86922963-86926179:-SKCMGSVA_HALLMARK_ANGIOGENESISEER1.4349e-020.2957image
ENSG00000163633.9,C4orf36SKCMGSVA_HALLMARK_HEME_METABOLISMEAG2.1468e-03-0.3468image
ENSG00000163633.9,C4orf36STADGSVA_HALLMARK_UV_RESPONSE_UPEAG2.0982e-040.2301image
chr4:86931530-86932352:-STADGSVA_HALLMARK_MTORC1_SIGNALINGEER2.4919e-040.2642image
chr4:86922963-86926179:-STADGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER1.2961e-030.2113image
chr4:86922963-86926179:-THCAGSVA_HALLMARK_GLYCOLYSISEER7.8854e-050.1836image
ENSG00000163633.9,C4orf36THCAGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG4.7575e-050.1887image


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7. Enriched editing regions and drugs for C4orf36


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000163633.9,C4orf36BLCABIBW2992EAG6.4058e-03-0.5027image
ENSG00000163633.9,C4orf36BRCALFM.A13EAG4.2963e-030.1684image
chr4:86922963-86926179:-BRCABAY.61.3606EER2.6286e-030.1930image
chr4:86922963-86926179:-CESCBortezomibEER2.4426e-03-0.5685image
ENSG00000163633.9,C4orf36CESCBortezomibEAG3.0288e-03-0.5489image
ENSG00000163633.9,C4orf36COADJW.7.52.1EAG2.3413e-030.4334image
ENSG00000163633.9,C4orf36ESCACMKEAG1.9444e-04-0.3286image
chr4:86922963-86926179:-ESCACMKEER1.6074e-02-0.2221image
ENSG00000163633.9,C4orf36GBMA.443654EAG1.5750e-020.2277image
chr4:86922963-86926179:-GBMA.443654EER1.6761e-020.2277image
ENSG00000163633.9,C4orf36HNSCATRAEAG7.6822e-030.5774image
chr4:86922963-86926179:-KICHDasatinibEER1.8316e-05-0.5115image
ENSG00000163633.9,C4orf36KICHDasatinibEAG3.3305e-05-0.4976image
ENSG00000163633.9,C4orf36KIRCErlotinibEAG1.6419e-020.1336image
chr4:86922963-86926179:-KIRCMetforminEER1.2157e-020.1407image
chr4:86922963-86926179:-KIRPEmbelinEER3.7226e-040.2603image
ENSG00000163633.9,C4orf36KIRPEmbelinEAG9.3531e-050.2825image
ENSG00000163633.9,C4orf36LAMLBleomycinEAG2.4474e-02-0.3509image
chr4:86922963-86926179:-MESOCMKEER1.1859e-02-0.5507image
ENSG00000163633.9,C4orf36MESOKIN001.135EAG1.4644e-02-0.5369image
chr4:86922963-86926179:-OVA.443654EER1.5546e-02-0.1827image
ENSG00000163633.9,C4orf36OVMidostaurinEAG2.2486e-030.2192image
chr4:86922963-86926179:-PAADBosutinibEER2.6121e-02-0.4126image
ENSG00000163633.9,C4orf36PAADBosutinibEAG2.5546e-02-0.4006image
chr4:86922963-86926179:-PCPGBryostatin.1EER1.7997e-04-0.3643image
ENSG00000163633.9,C4orf36PCPGBryostatin.1EAG1.7417e-04-0.3651image
chr4:86922963-86926179:-PRADJNK.9LEER1.5024e-030.2203image
ENSG00000163633.9,C4orf36PRADAS601245EAG2.1166e-030.2076image
ENSG00000163633.9,C4orf36READCCT018159EAG2.7778e-020.4086image
ENSG00000163633.9,C4orf36SARCGemcitabineEAG3.4844e-020.2991image
chr4:86922963-86926179:-SKCMBMS.708163EER2.5104e-020.2715image
ENSG00000163633.9,C4orf36SKCMBMS.708163EAG6.8712e-030.3076image
ENSG00000163633.9,C4orf36STADABT.888EAG1.2856e-02-0.1556image
chr4:86922963-86926179:-STADABT.888EER2.0336e-02-0.1532image
chr4:86931530-86932352:-STADCCT007093EER8.1547e-030.1924image
chr4:86922963-86926179:-THCACCT007093EER2.3609e-070.2389image
ENSG00000163633.9,C4orf36THCACCT007093EAG2.1726e-070.2391image
ENSG00000163633.9,C4orf36UCECBMS.708163EAG4.2624e-02-0.4462image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType