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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: WDR31 (ImmuneEditome ID:114987)

1. Gene summary of enriched editing regions for WDR31

check button Gene summary
Gene informationGene symbol

WDR31

Gene ID

114987

GeneSynonyms-
GeneCytomap

9q32

GeneTypeprotein-coding
GeneDescriptionWD repeat-containing protein 31
GeneModificationdate20230517
UniprotIDQ8NA23;A0A024R876;C9JWF1;F8WDK4
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr9:113313877-113315881:-ENST00000461942.4ENSG00000148225.14WDR31ncRNA_exonicAluSx,(AATGGTA)n,AluSc,AluJb,(TTTAT)n,AluY,AluSp,MIRchr9:113313877-113315881:-.alignment
chr9:113326562-113326722:-ENST00000461942.4ENSG00000148225.14WDR31ncRNA_intronicAluJochr9:113326562-113326722:-.alignment


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2. Tumor-specific enriched editing regions for WDR31


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot
chr9:113313877-113315881:-KIRCEER6.8228e-09image
ENSG00000148225.14,WDR31KIRCEAG6.8228e-09image
chr9:113313877-113315881:-KIRPEER2.7729e-03image
ENSG00000148225.14,WDR31KIRPEAG2.7729e-03image
chr9:113313877-113315881:-PRADEER2.3148e-02image
ENSG00000148225.14,WDR31PRADEAG2.3148e-02image
chr9:113313877-113315881:-THCAEER5.0074e-07image
ENSG00000148225.14,WDR31THCAEAG5.0074e-07image


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
chr9:113313877-113315881:-LUSCEER8.4113e-031.2736e-031.2236e+01image
ENSG00000148225.14,WDR31LUSCEAG8.4113e-031.2736e-031.2236e+01image
ENSG00000148225.14,WDR31PAADEAG3.1691e-024.8527e-021.0514e+01image

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3. Enriched editing regions and immune related genes for WDR31


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

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4. Enriched editing regions and immune related splicing for WDR31


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
ENSG00000148225.14,WDR31
KIRPEAGIRENSG00000114861.14chr370965889:70966056:70970735:709708050.26181.9318e-034.8819e-080.4002imageNADAR;AIFM1;CNBP;DDX54;DGCR8;DHX9;DICER1;DKC1;EIF4A3;ELAVL1;FAM120A;FBL;FMR1;FUS;HNRNPA1;HNRNPC;HNRNPU;IGF2BP1;IGF2BP2;IGF2BP3;ILF3;KHDRBS1;KHSRP;LIN28;LIN28B;MOV10;MSI1;MSI2;NOP56;NOP58;NUMA1;PRPF8;PTBP1;QKI;RANGAP1;RBM27;SAFB2;SRSF1;TAF15;TARDBP;U2AF2;UPF1;ZNF184FOXP1T_cells_regulatory_(Tregs)GSVA_HALLMARK_PROTEIN_SECRETION
chr9:113313877-113315881:-
KIRPEERIRENSG00000114861.14chr370965889:70966056:70970735:709708050.26181.8417e-034.8819e-080.4002imageNADAR;DGCR8;EIF4A3;SRSF1;TAF15;UPF1FOXP1T_cells_regulatory_(Tregs)GSVA_HALLMARK_PROTEIN_SECRETION

More results



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5. Enriched editing regions and immune infiltration for WDR31


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr9:113313877-113315881:-ACCEEREosinophils3.2038e-030.4717image
ENSG00000148225.14,WDR31ACCEAGEosinophils3.2038e-030.4717image
chr9:113313877-113315881:-BLCAEERT_cells_CD4_memory_activated3.8385e-030.3086image
ENSG00000148225.14,WDR31BLCAEAGT_cells_CD4_memory_activated3.8385e-030.3086image
chr9:113313877-113315881:-BRCAEERMacrophages_M21.9024e-03-0.1048image
ENSG00000148225.14,WDR31BRCAEAGMacrophages_M22.5888e-03-0.1017image
chr9:113313877-113315881:-CESCEERMonocytes2.3472e-020.2076image
ENSG00000148225.14,WDR31CESCEAGMonocytes2.3472e-020.2076image
ENSG00000148225.14,WDR31COADEAGMast_cells_activated1.7162e-030.3260image
chr9:113313877-113315881:-ESCAEERT_cells_CD4_memory_resting6.1444e-03-0.2852image
ENSG00000148225.14,WDR31ESCAEAGT_cells_CD4_memory_resting4.3053e-03-0.2950image
chr9:113313877-113315881:-GBMEERT_cells_CD4_naive3.7648e-02-0.2233image
ENSG00000148225.14,WDR31GBMEAGT_cells_CD4_naive3.7648e-02-0.2233image
chr9:113313877-113315881:-HNSCEERT_cells_regulatory_(Tregs)1.1645e-02-0.2465image
ENSG00000148225.14,WDR31HNSCEAGT_cells_regulatory_(Tregs)1.1645e-02-0.2465image
chr9:113313877-113315881:-KIRCEERMacrophages_M22.6108e-03-0.1852image
ENSG00000148225.14,WDR31KIRCEAGMacrophages_M22.6108e-03-0.1852image
chr9:113313877-113315881:-LGGEERMacrophages_M21.0472e-020.1307image
ENSG00000148225.14,WDR31LGGEAGMacrophages_M21.0472e-020.1307image
chr9:113313877-113315881:-LIHCEERMacrophages_M23.8641e-020.2655image
ENSG00000148225.14,WDR31LIHCEAGMacrophages_M23.8641e-020.2655image
chr9:113313877-113315881:-LUADEERMonocytes3.2928e-02-0.1386image
ENSG00000148225.14,WDR31LUADEAGMonocytes3.2933e-02-0.1386image
chr9:113313877-113315881:-OVEERB_cells_memory3.3340e-050.3374image
ENSG00000148225.14,WDR31OVEAGB_cells_memory7.1477e-050.3205image
chr9:113313877-113315881:-PCPGEERMacrophages_M26.3520e-030.2509image
ENSG00000148225.14,WDR31PCPGEAGMacrophages_M26.3520e-030.2509image
chr9:113313877-113315881:-PRADEERT_cells_follicular_helper3.8967e-03-0.1643image
ENSG00000148225.14,WDR31PRADEAGT_cells_follicular_helper3.8967e-03-0.1643image
ENSG00000148225.14,WDR31READEAGB_cells_memory3.1994e-020.4061image
chr9:113313877-113315881:-SARCEERT_cells_CD4_memory_activated5.9299e-050.4060image
ENSG00000148225.14,WDR31SARCEAGT_cells_CD4_memory_activated5.9299e-050.4060image
chr9:113313877-113315881:-SKCMEERDendritic_cells_activated5.5976e-060.3338image
ENSG00000148225.14,WDR31SKCMEAGDendritic_cells_activated5.5976e-060.3338image
chr9:113313877-113315881:-THCAEERT_cells_follicular_helper1.9815e-040.1850image
ENSG00000148225.14,WDR31THCAEAGT_cells_follicular_helper1.9815e-040.1850image
ENSG00000148225.14,WDR31THYMEAGDendritic_cells_resting4.2489e-020.3932image
chr9:113313877-113315881:-UCECEERNK_cells_activated4.5913e-020.2632image


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6. Enriched editing regions and immune gene sets for WDR31


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot
ENSG00000148225.14,WDR31COADEAG5.0329e-03-0.29321.2864e-02-0.26134.1498e-03-0.29943.0406e-02-0.2284image


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
ENSG00000148225.14,WDR31ACCGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG7.6290e-03-0.4317image
chr9:113313877-113315881:-ACCGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER7.6290e-03-0.4317image
ENSG00000148225.14,WDR31BLCAGSVA_HALLMARK_DNA_REPAIREAG6.0193e-030.2939image
chr9:113313877-113315881:-BLCAGSVA_HALLMARK_DNA_REPAIREER6.0193e-030.2939image
ENSG00000148225.14,WDR31BRCAGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG3.4756e-080.1850image
chr9:113313877-113315881:-BRCAGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER2.0976e-080.1879image
chr9:113313877-113315881:-CESCGSVA_HALLMARK_PANCREAS_BETA_CELLSEER3.8712e-03-0.2629image
ENSG00000148225.14,WDR31CESCGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG3.8712e-03-0.2629image
ENSG00000148225.14,WDR31COADGSVA_HALLMARK_UV_RESPONSE_UPEAG7.5175e-05-0.4050image
chr9:113313877-113315881:-ESCAGSVA_HALLMARK_INFLAMMATORY_RESPONSEEER2.6462e-020.2327image
ENSG00000148225.14,WDR31ESCAGSVA_HALLMARK_PI3K_AKT_MTOR_SIGNALINGEAG6.2609e-030.2830image
ENSG00000148225.14,WDR31GBMGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG1.5154e-020.2597image
chr9:113313877-113315881:-GBMGSVA_HALLMARK_PANCREAS_BETA_CELLSEER1.5154e-020.2597image
ENSG00000148225.14,WDR31HNSCGSVA_HALLMARK_MYOGENESISEAG1.2913e-020.2431image
chr9:113313877-113315881:-HNSCGSVA_HALLMARK_MYOGENESISEER1.2913e-020.2431image
ENSG00000148225.14,WDR31KIRCGSVA_HALLMARK_PROTEIN_SECRETIONEAG2.8941e-03-0.1833image
chr9:113313877-113315881:-KIRCGSVA_HALLMARK_PROTEIN_SECRETIONEER2.8941e-03-0.1833image
ENSG00000148225.14,WDR31KIRPGSVA_HALLMARK_MITOTIC_SPINDLEEAG7.7570e-07-0.3347image
chr9:113313877-113315881:-KIRPGSVA_HALLMARK_MITOTIC_SPINDLEEER7.7570e-07-0.3347image
chr9:113313877-113315881:-LGGGSVA_HALLMARK_UV_RESPONSE_DNEER9.3634e-04-0.1684image
ENSG00000148225.14,WDR31LGGGSVA_HALLMARK_UV_RESPONSE_DNEAG9.3634e-04-0.1684image
ENSG00000148225.14,WDR31LIHCGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEAG3.9622e-020.2642image
chr9:113313877-113315881:-LIHCGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER3.9622e-020.2642image
chr9:113313877-113315881:-LUADGSVA_HALLMARK_IL2_STAT5_SIGNALINGEER1.4412e-020.1588image
ENSG00000148225.14,WDR31LUADGSVA_HALLMARK_IL2_STAT5_SIGNALINGEAG1.4412e-020.1588image
chr9:113313877-113315881:-LUSCGSVA_HALLMARK_TNFA_SIGNALING_VIA_NFKBEER6.0433e-030.2414image
ENSG00000148225.14,WDR31LUSCGSVA_HALLMARK_TNFA_SIGNALING_VIA_NFKBEAG6.0433e-030.2414image
chr9:113313877-113315881:-OVGSVA_HALLMARK_MITOTIC_SPINDLEEER1.4091e-02-0.2035image
ENSG00000148225.14,WDR31OVGSVA_HALLMARK_MITOTIC_SPINDLEEAG3.0837e-02-0.1776image
ENSG00000148225.14,WDR31PAADGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEAG1.2854e-020.3722image
chr9:113313877-113315881:-PCPGGSVA_HALLMARK_SPERMATOGENESISEER9.9582e-03-0.2374image
ENSG00000148225.14,WDR31PCPGGSVA_HALLMARK_SPERMATOGENESISEAG9.9582e-03-0.2374image
ENSG00000148225.14,WDR31PRADGSVA_HALLMARK_MITOTIC_SPINDLEEAG1.0527e-06-0.2744image
chr9:113313877-113315881:-PRADGSVA_HALLMARK_MITOTIC_SPINDLEEER1.0527e-06-0.2744image
ENSG00000148225.14,WDR31READGSVA_HALLMARK_PANCREAS_BETA_CELLSEAG1.0052e-020.4782image
ENSG00000148225.14,WDR31SARCGSVA_HALLMARK_MTORC1_SIGNALINGEAG6.6865e-040.3483image
chr9:113313877-113315881:-SARCGSVA_HALLMARK_MTORC1_SIGNALINGEER6.6865e-040.3483image
ENSG00000148225.14,WDR31SKCMGSVA_HALLMARK_HYPOXIAEAG1.7178e-030.2340image
chr9:113313877-113315881:-SKCMGSVA_HALLMARK_HYPOXIAEER1.7178e-030.2340image
chr9:113313877-113315881:-STADGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER2.0331e-03-0.2437image
ENSG00000148225.14,WDR31STADGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG1.2514e-02-0.1964image
ENSG00000148225.14,WDR31THCAGSVA_HALLMARK_HEME_METABOLISMEAG4.6850e-09-0.2876image
chr9:113313877-113315881:-THCAGSVA_HALLMARK_HEME_METABOLISMEER4.6850e-09-0.2876image
chr9:113313877-113315881:-UCECGSVA_HALLMARK_HYPOXIAEER8.8567e-03-0.3408image
ENSG00000148225.14,WDR31UCECGSVA_HALLMARK_HYPOXIAEAG6.6468e-03-0.3496image
ENSG00000148225.14,WDR31UVMGSVA_HALLMARK_MYC_TARGETS_V2EAG2.1738e-040.7358image


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7. Enriched editing regions and drugs for WDR31


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
ENSG00000148225.14,WDR31BLCAAG.014699EAG1.1606e-030.3445image
chr9:113313877-113315881:-BLCAAG.014699EER1.1606e-030.3445image
ENSG00000148225.14,WDR31BRCABMS.536924EAG5.6848e-12-0.2302image
chr9:113313877-113315881:-BRCABMS.536924EER3.3899e-12-0.2325image
chr9:113313877-113315881:-CESCBryostatin.1EER2.5329e-03-0.2744image
ENSG00000148225.14,WDR31CESCBryostatin.1EAG2.5329e-03-0.2744image
ENSG00000148225.14,WDR31COADCCT007093EAG1.3562e-03-0.3327image
ENSG00000148225.14,WDR31ESCADMOGEAG3.8831e-03-0.2982image
chr9:113313877-113315881:-ESCADMOGEER4.8649e-03-0.2927image
chr9:113313877-113315881:-GBMFTI.277EER3.1638e-020.2306image
ENSG00000148225.14,WDR31GBMFTI.277EAG3.1638e-020.2306image
ENSG00000148225.14,WDR31HNSCBMS.754807EAG1.1616e-03-0.3142image
chr9:113313877-113315881:-HNSCBMS.754807EER1.1616e-03-0.3142image
chr9:113313877-113315881:-KIRCAMG.706EER9.6123e-04-0.2028image
ENSG00000148225.14,WDR31KIRCAMG.706EAG9.6123e-04-0.2028image
ENSG00000148225.14,WDR31KIRPAZD6482EAG4.1719e-050.2801image
chr9:113313877-113315881:-KIRPAZD6482EER4.1719e-050.2801image
chr9:113313877-113315881:-LGGBIRB.0796EER4.8822e-03-0.1435image
ENSG00000148225.14,WDR31LGGBIRB.0796EAG4.8822e-03-0.1435image
ENSG00000148225.14,WDR31LIHCJNJ.26854165EAG6.1870e-030.3468image
chr9:113313877-113315881:-LIHCJNJ.26854165EER6.1870e-030.3468image
chr9:113313877-113315881:-LUADAG.014699EER1.2691e-02-0.1617image
ENSG00000148225.14,WDR31LUADAG.014699EAG1.2692e-02-0.1617image
chr9:113313877-113315881:-LUSCABT.888EER1.7686e-040.3256image
ENSG00000148225.14,WDR31LUSCABT.888EAG1.7686e-040.3256image
chr9:113313877-113315881:-OVA.770041EER1.6044e-04-0.3084image
ENSG00000148225.14,WDR31OVBMS.509744EAG8.1349e-04-0.2723image
chr9:113313877-113315881:-PCPGCisplatinEER1.8880e-02-0.2168image
ENSG00000148225.14,WDR31PCPGCisplatinEAG1.8880e-02-0.2168image
chr9:113313877-113315881:-PRADEmbelinEER1.6054e-050.2435image
ENSG00000148225.14,WDR31PRADEmbelinEAG1.6054e-050.2435image
ENSG00000148225.14,WDR31READGefitinibEAG1.0064e-020.4782image
ENSG00000148225.14,WDR31SARCCCT007093EAG1.4857e-050.4348image
chr9:113313877-113315881:-SARCCCT007093EER1.4857e-050.4348image
ENSG00000148225.14,WDR31SKCMBI.2536EAG4.1684e-04-0.2625image
chr9:113313877-113315881:-SKCMBI.2536EER4.1684e-04-0.2625image
chr9:113313877-113315881:-STADABT.263EER1.4251e-030.2516image
ENSG00000148225.14,WDR31STADABT.263EAG3.0340e-030.2322image
ENSG00000148225.14,WDR31THCABMS.536924EAG1.8019e-13-0.3570image
chr9:113313877-113315881:-THCABMS.536924EER1.8019e-13-0.3570image
ENSG00000148225.14,WDR31THYMBMS.509744EAG7.8004e-03-0.5008image
chr9:113313877-113315881:-UCECBI.2536EER9.2369e-04-0.4235image
ENSG00000148225.14,WDR31UCECBI.2536EAG6.3395e-04-0.4320image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType