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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: RNU7-111P (ImmuneEditome ID:106481800)

1. Gene summary of enriched editing regions for RNU7-111P

check button Gene summary
Gene informationGene symbol

RNU7-111P

Gene ID

106481800

GeneSynonyms-
GeneCytomap

15q26.1

GeneTypepseudo
GeneDescription-
GeneModificationdate20230329
UniprotID.
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr15:89895912-89899415:-ENST00000516836.1ENSG00000252645.1RNU7-111PncRNA_exonicU7,AluSq2,AluSz,L1ME4c,MER103Cchr15:89895912-89899415:-.alignment


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2. Tumor-specific enriched editing regions for RNU7-111P


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot
chr15:89895912-89899415:-BRCAEER1.0778e-17image
chr15:89895912-89899415:-COADEER8.3037e-17image
chr15:89895912-89899415:-HNSCEER1.1268e-09image
chr15:89895912-89899415:-KICHEER1.9093e-03image
chr15:89895912-89899415:-KIRCEER2.5524e-02image
chr15:89895912-89899415:-LIHCEER8.1826e-04image
chr15:89895912-89899415:-LUADEER7.0193e-05image
chr15:89895912-89899415:-LUSCEER8.5052e-09image
chr15:89895912-89899415:-UCECEER5.7796e-05image


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot
chr15:89895912-89899415:-KIRPCliEER4.5039e-029.1704e-030.1866image
chr15:89895912-89899415:-LUSCPathEER3.6689e-027.0931e-030.1221image


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot
chr15:89895912-89899415:-ESCAEER1.7905e-021.1295e-022.9734e+03image

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3. Enriched editing regions and immune related genes for RNU7-111P


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr15:89895912-89899415:-LUADEERENSG00000164109,MAD2L10.42611.7820e-204.5703e-230.4221imageNNNAT_cells_CD4_memory_activatedGSVA_HALLMARK_E2F_TARGETS
chr15:89895912-89899415:-LUADEERENSG00000198843,SELT0.32975.5228e-112.9274e-220.4148imageNNNAT_cells_gamma_deltaGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALING
chr15:89895912-89899415:-HNSCEERENSG00000242498,ARPIN-0.38795.1090e-151.7863e-20-0.4095imageNNNAT_cells_regulatory_(Tregs)GSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
chr15:89895912-89899415:-KICHEERENSG00000275342,SGK223-0.61081.2131e-025.7993e-05-0.4808imageNNNAGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATION
chr15:89895912-89899415:-KICHEERENSG00000242498,ARPIN-0.60391.7174e-023.5061e-05-0.4929imageNNNAPlasma_cellsGSVA_HALLMARK_MITOTIC_SPINDLE
chr15:89895912-89899415:-KICHEERENSG00000213859,KCTD11-0.57862.0732e-021.6102e-04-0.4546imageNNNANeutrophilsGSVA_HALLMARK_APICAL_JUNCTION
chr15:89895912-89899415:-KICHEERENSG00000185101,ANO9-0.57882.3396e-024.4006e-04-0.4266imageNNNAEosinophilsGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSE
chr15:89895912-89899415:-KICHEERENSG00000181830,SLC35C1-0.57422.3602e-022.2352e-04-0.4457imageNNNAMacrophages_M2GSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATION
chr15:89895912-89899415:-KICHEERENSG00000124766,SOX4-0.57202.3602e-023.0007e-04-0.4375imageNNSOX4GSVA_HALLMARK_IL6_JAK_STAT3_SIGNALING
chr15:89895912-89899415:-KICHEERENSG00000104365,IKBKB-0.55102.7618e-023.0081e-06-0.5464imageNNIKBKBNK_cells_restingGSVA_HALLMARK_TGF_BETA_SIGNALING

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4. Enriched editing regions and immune related splicing for RNU7-111P


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark
chr15:89895912-89899415:-
LUADEERIRENSG00000111669.10chr126868113:6868509:6868863:6868987-0.29112.1283e-122.3837e-16-0.4084imageNNNAT_cells_CD4_memory_activatedGSVA_HALLMARK_PROTEIN_SECRETION
chr15:89895912-89899415:-
LUADEERIRENSG00000150991.10chr12124911647:124913774:124914004:124914065-0.25582.5336e-091.2610e-17-0.4024imageNNNAT_cells_CD4_memory_activatedGSVA_HALLMARK_MTORC1_SIGNALING
chr15:89895912-89899415:-
SARCEERIRENSG00000137822.8chr1543401715:43403799:43404412:43404552-0.31103.5663e-035.6197e-12-0.4170imageNNNAT_cells_CD4_memory_activatedGSVA_HALLMARK_MTORC1_SIGNALING
chr15:89895912-89899415:-
TGCTEERA5ENSG00000103222.14chr1616106737:16106868:16102682:16102717:16102682:16103879-0.27697.3427e-031.7213e-07-0.4625imageNNNAT_cells_CD4_naiveGSVA_HALLMARK_MYC_TARGETS_V2
chr15:89895912-89899415:-
TGCTEERIRENSG00000075399.8chr1689716461:89716624:89716729:897168190.40873.7028e-041.9532e-060.4304imageNNNAT_cells_regulatory_(Tregs)GSVA_HALLMARK_MYC_TARGETS_V2
chr15:89895912-89899415:-
TGCTEERESENSG00000221978.7chr11390765:1390865:1391296:1391575:1392678:1392716-0.34784.8630e-033.8422e-06-0.4157imageNNNAMacrophages_M2GSVA_HALLMARK_PANCREAS_BETA_CELLS
chr15:89895912-89899415:-
TGCTEERA5ENSG00000083807.5chr1958498643:58498691:58499122:58499142:58498784:584991420.35521.7606e-034.1830e-060.4015imageNNNAT_cells_CD4_memory_restingGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSE
chr15:89895912-89899415:-
TGCTEERIRENSG00000105373.14chr1947755755:47755987:47756527:477566040.40351.7690e-035.9559e-070.4244imageNNNAT_cells_regulatory_(Tregs)GSVA_HALLMARK_MYC_TARGETS_V2
chr15:89895912-89899415:-
TGCTEERIRENSG00000180354.11chr730157437:30157595:30158985:30159918-0.32226.0882e-033.3932e-06-0.4301imageNNNAMacrophages_M2GSVA_HALLMARK_MYC_TARGETS_V2
chr15:89895912-89899415:-
TGCTEERA5ENSG00000109113.13chr1728717212:28717291:28718369:28718405:28718121:287184050.45833.7960e-051.1393e-060.4374imageNNRAB34Macrophages_M2GSVA_HALLMARK_APICAL_JUNCTION

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5. Enriched editing regions and immune infiltration for RNU7-111P


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
chr15:89895912-89899415:-ACCEEREosinophils2.0330e-02-0.2789image
chr15:89895912-89899415:-BLCAEERT_cells_CD4_memory_activated4.8472e-050.2034image
chr15:89895912-89899415:-BRCAEERT_cells_CD4_memory_activated7.3881e-060.1368image
chr15:89895912-89899415:-CESCEERT_cells_CD81.1060e-020.1478image
chr15:89895912-89899415:-COADEERDendritic_cells_activated1.1080e-030.1967image
chr15:89895912-89899415:-ESCAEERMonocytes5.8292e-03-0.2164image
chr15:89895912-89899415:-GBMEERMacrophages_M01.4396e-02-0.1896image
chr15:89895912-89899415:-HNSCEERMacrophages_M01.8197e-04-0.1716image
chr15:89895912-89899415:-KICHEERNK_cells_activated2.4580e-020.2808image
chr15:89895912-89899415:-KIRCEERDendritic_cells_activated2.8298e-060.2376image
chr15:89895912-89899415:-KIRPEERT_cells_CD4_memory_resting2.0784e-06-0.2792image
chr15:89895912-89899415:-LGGEERT_cells_CD4_memory_activated1.9171e-020.1018image
chr15:89895912-89899415:-LIHCEERNK_cells_activated4.5525e-020.1133image
chr15:89895912-89899415:-LUADEERT_cells_CD4_memory_activated7.4854e-080.2375image
chr15:89895912-89899415:-LUSCEERT_cells_CD4_memory_activated1.2380e-060.2179image
chr15:89895912-89899415:-MESOEERB_cells_naive2.6993e-02-0.2458image
chr15:89895912-89899415:-OVEERT_cells_CD81.2941e-020.1463image
chr15:89895912-89899415:-PAADEERT_cells_CD86.7286e-03-0.2030image
chr15:89895912-89899415:-PCPGEEREosinophils1.5206e-020.1992image
chr15:89895912-89899415:-PRADEERT_cells_regulatory_(Tregs)1.8689e-030.1392image
chr15:89895912-89899415:-READEEREosinophils7.1195e-040.3413image
chr15:89895912-89899415:-SARCEERT_cells_CD89.2844e-030.1639image
chr15:89895912-89899415:-SKCMEERT_cells_CD85.8663e-070.2304image
chr15:89895912-89899415:-STADEEREosinophils8.4653e-06-0.2295image
chr15:89895912-89899415:-TGCTEERT_cells_CD4_memory_activated7.1908e-050.3397image
chr15:89895912-89899415:-THCAEERT_cells_regulatory_(Tregs)5.4510e-040.1536image
chr15:89895912-89899415:-THYMEERT_cells_CD4_memory_activated1.6893e-030.3148image
chr15:89895912-89899415:-UCECEERT_cells_CD4_naive5.9061e-040.2671image
chr15:89895912-89899415:-UCSEERT_cells_CD4_memory_activated9.3908e-060.5629image
chr15:89895912-89899415:-UVMEERT_cells_regulatory_(Tregs)1.1724e-020.2841image


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6. Enriched editing regions and immune gene sets for RNU7-111P


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot
chr15:89895912-89899415:-KIRPEER2.7245e-02image1.7095e-030.1866image


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot
chr15:89895912-89899415:-LUADEER5.1118e-120.30194.4494e-080.24148.0015e-060.19803.8788e-070.2244image


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
chr15:89895912-89899415:-ACCGSVA_HALLMARK_HYPOXIAEER2.3740e-030.3601image
chr15:89895912-89899415:-BLCAGSVA_HALLMARK_TNFA_SIGNALING_VIA_NFKBEER1.6995e-100.3149image
chr15:89895912-89899415:-BRCAGSVA_HALLMARK_UNFOLDED_PROTEIN_RESPONSEEER4.5631e-130.2192image
chr15:89895912-89899415:-CESCGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER1.3908e-040.2200image
chr15:89895912-89899415:-COADGSVA_HALLMARK_INTERFERON_GAMMA_RESPONSEEER8.4580e-040.2012image
chr15:89895912-89899415:-ESCAGSVA_HALLMARK_BILE_ACID_METABOLISMEER4.0013e-05-0.3177image
chr15:89895912-89899415:-GBMGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER1.0396e-07-0.3986image
chr15:89895912-89899415:-HNSCGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER2.3680e-080.2537image
chr15:89895912-89899415:-KICHGSVA_HALLMARK_PI3K_AKT_MTOR_SIGNALINGEER6.4466e-05-0.4781image
chr15:89895912-89899415:-KIRCGSVA_HALLMARK_HEDGEHOG_SIGNALINGEER1.5987e-04-0.1925image
chr15:89895912-89899415:-KIRPGSVA_HALLMARK_KRAS_SIGNALING_DNEER8.2166e-070.2896image
chr15:89895912-89899415:-LGGGSVA_HALLMARK_KRAS_SIGNALING_DNEER3.9790e-050.1776image
chr15:89895912-89899415:-LIHCGSVA_HALLMARK_BILE_ACID_METABOLISMEER1.7995e-060.2665image
chr15:89895912-89899415:-LUADGSVA_HALLMARK_MTORC1_SIGNALINGEER2.6831e-170.3657image
chr15:89895912-89899415:-LUSCGSVA_HALLMARK_MYC_TARGETS_V1EER7.0600e-060.2022image
chr15:89895912-89899415:-MESOGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER4.5121e-020.2233image
chr15:89895912-89899415:-OVGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEER8.3201e-110.3706image
chr15:89895912-89899415:-PAADGSVA_HALLMARK_P53_PATHWAYEER1.5580e-020.1816image
chr15:89895912-89899415:-PCPGGSVA_HALLMARK_GLYCOLYSISEER6.0557e-030.2246image
chr15:89895912-89899415:-PRADGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER7.1842e-07-0.2201image
chr15:89895912-89899415:-SARCGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER1.2303e-040.2400image
chr15:89895912-89899415:-SKCMGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER2.2035e-080.2572image
chr15:89895912-89899415:-STADGSVA_HALLMARK_INTERFERON_ALPHA_RESPONSEEER2.3748e-050.2181image
chr15:89895912-89899415:-TGCTGSVA_HALLMARK_MYC_TARGETS_V2EER4.7519e-090.4839image
chr15:89895912-89899415:-THCAGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEER1.5747e-04-0.1677image
chr15:89895912-89899415:-THYMGSVA_HALLMARK_TGF_BETA_SIGNALINGEER4.2495e-05-0.4031image
chr15:89895912-89899415:-UCECGSVA_HALLMARK_UV_RESPONSE_DNEER2.3615e-03-0.2373image
chr15:89895912-89899415:-UCSGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEER3.3738e-020.2895image
chr15:89895912-89899415:-UVMGSVA_HALLMARK_KRAS_SIGNALING_DNEER1.3385e-040.4191image


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7. Enriched editing regions and drugs for RNU7-111P


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
chr15:89895912-89899415:-ACCKIN001.135EER2.3313e-020.2728image
chr15:89895912-89899415:-BLCAKU.55933EER1.0388e-10-0.3184image
chr15:89895912-89899415:-BRCACCT007093EER1.3420e-070.1606image
chr15:89895912-89899415:-CESCCHIR.99021EER5.7086e-040.1994image
chr15:89895912-89899415:-CHOLAS601245EER1.0470e-03-0.5374image
chr15:89895912-89899415:-COADLenalidomideEER2.0893e-02-0.1400image
chr15:89895912-89899415:-ESCAAZD.2281EER3.0788e-03-0.2326image
chr15:89895912-89899415:-GBMBIBW2992EER1.8677e-05-0.3256image
chr15:89895912-89899415:-HNSCCCT007093EER1.2609e-030.1482image
chr15:89895912-89899415:-KICHGW.441756EER1.6953e-02-0.2975image
chr15:89895912-89899415:-KIRCAS601245EER4.9594e-090.2943image
chr15:89895912-89899415:-KIRPEHT.1864EER5.0358e-080.3186image
chr15:89895912-89899415:-LGGEmbelinEER4.5104e-090.2515image
chr15:89895912-89899415:-LIHCIPA.3EER2.5841e-060.2629image
chr15:89895912-89899415:-LUADGemcitabineEER2.0289e-15-0.3446image
chr15:89895912-89899415:-LUSCCyclopamineEER2.8593e-05-0.1888image
chr15:89895912-89899415:-MESOBexaroteneEER3.4504e-020.2352image
chr15:89895912-89899415:-OVCCT007093EER2.4639e-080.3212image
chr15:89895912-89899415:-PAADBI.D1870EER5.0286e-030.2136image
chr15:89895912-89899415:-PCPGCCT018159EER7.8805e-03-0.2176image
chr15:89895912-89899415:-PRADCCT007093EER2.4430e-100.2790image
chr15:89895912-89899415:-READCyclopamineEER1.1243e-02-0.2604image
chr15:89895912-89899415:-SARCAG.014699EER1.8216e-100.3884image
chr15:89895912-89899415:-SKCMJNK.9LEER1.8544e-05-0.1982image
chr15:89895912-89899415:-STADCCT007093EER5.5089e-050.2083image
chr15:89895912-89899415:-TGCTAS601245EER7.6815e-070.4161image
chr15:89895912-89899415:-THCAEmbelinEER1.7531e-100.2795image
chr15:89895912-89899415:-THYMAZD.2281EER5.4208e-05-0.3980image
chr15:89895912-89899415:-UCECGW843682XEER2.0680e-05-0.3278image
chr15:89895912-89899415:-UCSImatinibEER1.9628e-040.4858image
chr15:89895912-89899415:-UVMLFM.A13EER5.8708e-05-0.4387image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType