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Center for Computational Systems Medicine
Soverview

1. Gene summary of enriched editing regions

Soverview

2. Tumor-specific enriched editing regions

Comparison of enriched editing regions between tumor and normal.

Correlation of enriched editing regions with tumor stages.

Associations of enriched editing regions with cancer survival.

Soverview

3. Enriched editing regions and immune related genes

Soverview

4. Enriched editing regions and immune related splicing

Soverview

5. Enriched editing regions and immune infiltration

Soverview

6. Enriched editing regions and immune gene sets

Correlation of enriched editing regions with epithelial-mesenchymal transition.

Correlations of enriched editing regions with hypoxic.

Associations of enriched editing regions with hallmark gene sets from MSigDB.

Soverview

7. Enriched editing regions and drugs

Correlations between enriched editing regions and drug sensitivity.

Enriched editing regions targeted by drugs from DrugBank database.

Editing gene: NUTM2B-AS1 (ImmuneEditome ID:101060691)

1. Gene summary of enriched editing regions for NUTM2B-AS1

check button Gene summary
Gene informationGene symbol

NUTM2B-AS1

Gene ID

101060691

GeneSynonymsOPML1
GeneCytomap

10q22.3

GeneTypencRNA
GeneDescription-
GeneModificationdate20230329
UniprotID.
PubMed ID

check buttonUCSC image.
all structure

check buttonLocations of each EERs.
EERENSTENSGGeneNameRegionRepeatdsRNA structure
chr10:79718939-79719186:-ENST00000619625.3ENSG00000225484.5NUTM2B-AS1ncRNA_exonicMSTB1chr10:79718939-79719186:-.alignment
chr10:79722462-79725029:-ENST00000619625.3ENSG00000225484.5NUTM2B-AS1ncRNA_exonicMSTB1,MSTA,MLT1D,AluJb,AluSx,AluJo,L1MB4chr10:79722462-79725029:-.alignment
chr10:79731926-79732970:-ENST00000596088.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicL2c,AluSx4,L2a,AluSz6chr10:79731926-79732970:-.alignment
chr10:79731926-79732970:-ENST00000600376.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicL2c,AluSx4,L2a,AluSz6chr10:79731926-79732970:-.alignment
chr10:79731926-79732970:-ENST00000601369.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicL2c,AluSx4,L2a,AluSz6chr10:79731926-79732970:-.alignment
chr10:79731926-79732970:-ENST00000619625.3ENSG00000225484.5NUTM2B-AS1ncRNA_intronicL2c,AluSx4,L2a,AluSz6chr10:79731926-79732970:-.alignment
chr10:79738639-79739085:-ENST00000596088.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJr4,AluSx1chr10:79738639-79739085:-.alignment
chr10:79738639-79739085:-ENST00000600376.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJr4,AluSx1chr10:79738639-79739085:-.alignment
chr10:79738639-79739085:-ENST00000601369.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJr4,AluSx1chr10:79738639-79739085:-.alignment
chr10:79738639-79739085:-ENST00000619625.3ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJr4,AluSx1chr10:79738639-79739085:-.alignment
chr10:79739632-79740454:-ENST00000596088.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJo,AluJbchr10:79739632-79740454:-.alignment
chr10:79739632-79740454:-ENST00000600376.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJo,AluJbchr10:79739632-79740454:-.alignment
chr10:79739632-79740454:-ENST00000601369.4ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJo,AluJbchr10:79739632-79740454:-.alignment
chr10:79739632-79740454:-ENST00000619625.3ENSG00000225484.5NUTM2B-AS1ncRNA_intronicAluJo,AluJbchr10:79739632-79740454:-.alignment


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2. Tumor-specific enriched editing regions for NUTM2B-AS1


all structure

check buttonComparison of enriched editing regions between tumor and normal.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypePBoxplot


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check buttonCorrelation of enriched editing regions with tumor stages.
* AnovaP<0.05, Pearson P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes, Path: Pathological stage, Cli: Clinical stage.
* Only shows the most significant correlation result of EERs/EAGs with either pathological stage or clinical stage according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeStageTypeAnovaPPRBoxplot
chr10:79722462-79725029:-STADPathEER1.0295e-021.0870e-020.2718image


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check button Associations of enriched editing regions with cancer survival.
* Pkm<0.05 and Pcox<0.05.
* EER: enriched editing region, EAG: EER-associated genes.
ID_eventscancerTypeIDPkmPcox_continuousHR_continuousKMPlot

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3. Enriched editing regions and immune related genes for NUTM2B-AS1


all structure

check button Enriched editing regions and immune related genes.
* First, the associations between enriched editing regions and genes were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the gene relationships with immune were tested by three analyses: whether the gene is an immune gene (InnateDB、Immport、Immunome、Immunogenetic Related Information Source (IRIS)), whether the gene is associated with immune infiltration and whether the gene is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of genes with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeGenebetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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4. Enriched editing regions and immune related splicing for NUTM2B-AS1


all structure

check button Enriched editing regions and immune related splicing.
* First, the associations between enriched editing regions and splicing events were tested by QTL and Pearson method (QTL: FDR<0.05 and Pearson: P<0.05).
* Second, the splicing relationships with immune were tested by three analyses: whether the splicing event locates in an immune gene (InnateDB、Immport, Immunome and Immunogenetic Related Information Source (IRIS)), whether the splicing event is associated with immune infiltration and whether the splicing event is related to immune gene sets.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of splicing events with the fraction of different immune cells and the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeSplicingTypeSplicingGeneSplicingChrSplicingPositionbetaFDRPearsonPPearsonRCorrelationPlotRBPRBPtargetsImmuneGeneImmuneFractionHallMark

More results



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5. Enriched editing regions and immune infiltration for NUTM2B-AS1


all structure

check button Associations of enriched editing regions with immune infiltration.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the fraction of different immune cells according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerTypeIDImmuneCellPRCorrelationPlot
ENSG00000225484.5,NUTM2B-AS1BLCAEAGEosinophils2.4548e-020.4167image
chr10:79718939-79719186:-BRCAEERNK_cells_activated7.2722e-03-0.2108image
chr10:79722462-79725029:-BRCAEERT_cells_regulatory_(Tregs)1.0357e-020.2647image
ENSG00000225484.5,NUTM2B-AS1BRCAEAGNK_cells_activated3.5215e-03-0.1865image
ENSG00000225484.5,NUTM2B-AS1CESCEAGT_cells_regulatory_(Tregs)8.8159e-030.4191image
ENSG00000225484.5,NUTM2B-AS1COADEAGDendritic_cells_activated8.5162e-030.4960image
chr10:79718939-79719186:-ESCAEEREosinophils1.1317e-020.3054image
chr10:79722462-79725029:-ESCAEERMacrophages_M24.2332e-02-0.2367image
ENSG00000225484.5,NUTM2B-AS1ESCAEAGT_cells_CD81.7451e-020.2263image
ENSG00000225484.5,NUTM2B-AS1KIRCEAGDendritic_cells_activated8.5128e-030.3288image
ENSG00000225484.5,NUTM2B-AS1LGGEAGNK_cells_activated2.0292e-030.2534image
ENSG00000225484.5,NUTM2B-AS1LUADEAGT_cells_CD82.0245e-020.2530image
ENSG00000225484.5,NUTM2B-AS1LUSCEAGDendritic_cells_resting3.1503e-02-0.3406image
chr10:79718939-79719186:-OVEERT_cells_CD81.2308e-020.3354image
ENSG00000225484.5,NUTM2B-AS1OVEAGT_cells_CD82.8364e-030.2437image
ENSG00000225484.5,NUTM2B-AS1PCPGEAGNK_cells_resting1.4235e-030.5400image
ENSG00000225484.5,NUTM2B-AS1PRADEAGDendritic_cells_activated2.9962e-020.3394image
chr10:79722462-79725029:-STADEERT_cells_CD4_naive2.0692e-030.3155image
ENSG00000225484.5,NUTM2B-AS1STADEAGNK_cells_activated2.1256e-030.2139image


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6. Enriched editing regions and immune gene sets for NUTM2B-AS1


all structure

check button Correlation of enriched editing regions with epithelial-mesenchymal transition.
* First, the differences of enriched editing regions between Epi and Mes groups (defined by KS-test) were compared (P<0.05 and Informative number >=20).
* Second, the correlations between enriched editing regions and gene set score of HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly edited between Epi and Mes group.
ID_eventscancerTypeE2M_PBoxplotCorPCorRCorrelationPlot


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check button Correlations of enriched editing regions with hypoxic.
* First, there are four hypoxia scores used in the database. The first three hypoxic scores were calculated on three gene sets of Buffa, Ragnum and Winter based on one previous study (PMID: 32024819). One last hypoxia score was defined on HALLMARK_HYPOXIA by GSVA method.
* Second, the correlations enriched editing regions with the four hypoxic scores were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the EERs/EAGs significantly correlated with all four hypoxia gene set scores. For more results, please go to download page.
ID_eventscancerTypeBuffa_P Buffa_R Ragnum_P Ragnum_R Winter_P Winter_R HALLMARK_P HALLMARK_R CorrelationPlot


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check button Associations of enriched editing regions with hallmark gene sets from MSigDB.
* P<0.05 and Informative number >=20.
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the scores of 50 hallmark genesets according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerHallmarkTypeTypePRCorrelationPlot
chr10:79722462-79725029:-BRCAGSVA_HALLMARK_MITOTIC_SPINDLEEER3.0229e-030.3043image
ENSG00000225484.5,NUTM2B-AS1BRCAGSVA_HALLMARK_MITOTIC_SPINDLEEAG2.3363e-040.2340image
ENSG00000225484.5,NUTM2B-AS1CESCGSVA_HALLMARK_ESTROGEN_RESPONSE_LATEEAG2.3010e-020.3680image
chr10:79718939-79719186:-ESCAGSVA_HALLMARK_APICAL_JUNCTIONEER1.1639e-030.3856image
ENSG00000225484.5,NUTM2B-AS1ESCAGSVA_HALLMARK_KRAS_SIGNALING_DNEAG3.8235e-030.2736image
chr10:79722462-79725029:-ESCAGSVA_HALLMARK_APICAL_SURFACEEER6.9565e-030.3112image
ENSG00000225484.5,NUTM2B-AS1HNSCGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG2.0563e-02-0.3744image
ENSG00000225484.5,NUTM2B-AS1KIRCGSVA_HALLMARK_OXIDATIVE_PHOSPHORYLATIONEAG2.0673e-020.2910image
ENSG00000225484.5,NUTM2B-AS1LAMLGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG5.0789e-03-0.3066image
ENSG00000225484.5,NUTM2B-AS1LGGGSVA_HALLMARK_G2M_CHECKPOINTEAG3.3018e-03-0.2416image
ENSG00000225484.5,NUTM2B-AS1LUADGSVA_HALLMARK_PEROXISOMEEAG2.2674e-030.3287image
chr10:79718939-79719186:-OVGSVA_HALLMARK_COMPLEMENTEER1.9642e-040.4817image
ENSG00000225484.5,NUTM2B-AS1OVGSVA_HALLMARK_WNT_BETA_CATENIN_SIGNALINGEAG3.6797e-03-0.2373image
ENSG00000225484.5,NUTM2B-AS1PCPGGSVA_HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAYEAG3.1852e-020.3802image
ENSG00000225484.5,NUTM2B-AS1PRADGSVA_HALLMARK_CHOLESTEROL_HOMEOSTASISEAG3.7060e-03-0.4432image
ENSG00000225484.5,NUTM2B-AS1STADGSVA_HALLMARK_TGF_BETA_SIGNALINGEAG4.7689e-03-0.1969image
chr10:79731926-79732970:-STADGSVA_HALLMARK_BILE_ACID_METABOLISMEER1.9960e-030.3944image
chr10:79722462-79725029:-STADGSVA_HALLMARK_ALLOGRAFT_REJECTIONEER4.8133e-030.2900image
chr10:79718939-79719186:-STADGSVA_HALLMARK_ANDROGEN_RESPONSEEER4.5956e-02-0.2098image
ENSG00000225484.5,NUTM2B-AS1THCAGSVA_HALLMARK_FATTY_ACID_METABOLISMEAG3.2266e-02-0.3680image


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7. Enriched editing regions and drugs for NUTM2B-AS1


all structure

check button Correlations between enriched editing regions and drug sensitivity.
* First, the drug sensitivity (IS50) was estimated on 84 drugs by pRRophetic package.
* Second, the correlations between editing enriched regions and drug sensitivity were analyzed (P<0.05 and Informative number >=20).
* EER: enriched editing region, EAG: EER-associated genes.
* Only shows the most significant correlation result of EERs/EAGs with the IS50 scores of 84 drugs according to correlation coefficient (R). For more results, please go to download page.
ID_eventscancerDrugTypePRCorrelationPlot
chr10:79722462-79725029:-BRCALFM.A13EER2.2205e-020.2370image
chr10:79718939-79719186:-BRCAEmbelinEER4.3349e-03-0.2237image
ENSG00000225484.5,NUTM2B-AS1BRCAFH535EAG4.5550e-02-0.1284image
ENSG00000225484.5,NUTM2B-AS1CESCDasatinibEAG2.2922e-04-0.5702image
ENSG00000225484.5,NUTM2B-AS1COADGemcitabineEAG3.6708e-020.4038image
chr10:79718939-79719186:-ESCABexaroteneEER1.1762e-02-0.3039image
ENSG00000225484.5,NUTM2B-AS1ESCACCT018159EAG9.7591e-04-0.3115image
chr10:79722462-79725029:-ESCAFTI.277EER6.4313e-04-0.3877image
ENSG00000225484.5,NUTM2B-AS1HNSCAZD8055EAG2.0614e-040.5670image
ENSG00000225484.5,NUTM2B-AS1KIRCBI.D1870EAG3.0971e-040.4398image
ENSG00000225484.5,NUTM2B-AS1LAMLCGP.082996EAG1.2326e-020.2752image
ENSG00000225484.5,NUTM2B-AS1LGGEmbelinEAG2.6274e-040.2977image
ENSG00000225484.5,NUTM2B-AS1LUADFH535EAG4.1210e-05-0.4318image
ENSG00000225484.5,NUTM2B-AS1LUSCCHIR.99021EAG2.6785e-030.4622image
chr10:79718939-79719186:-OVBMS.708163EER9.8258e-03-0.3453image
ENSG00000225484.5,NUTM2B-AS1OVCI.1040EAG4.9680e-04-0.2828image
ENSG00000225484.5,NUTM2B-AS1PCPGBleomycinEAG1.7729e-020.4165image
ENSG00000225484.5,NUTM2B-AS1PRADGW.441756EAG5.5078e-030.4258image
chr10:79718939-79719186:-SKCMCytarabineEER9.5019e-03-0.5287image
ENSG00000225484.5,NUTM2B-AS1SKCMCytarabineEAG2.1234e-03-0.5158image
ENSG00000225484.5,NUTM2B-AS1STADEHT.1864EAG1.4587e-02-0.1708image
chr10:79722462-79725029:-STADGW.441756EER2.7069e-030.3076image


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check button EAGs targeted by drugs from DrugBank database.
* EAG: EER-associated genes.
EERENSTUniprotIDDrugBankIDDrugDrugType